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The map label for this gene is yhcR [H]

Identifier: 218235001

GI number: 218235001

Start: 1083435

End: 1085801

Strand: Direct

Name: yhcR [H]

Synonym: BCB4264_A1107

Alternate gene names: 218235001

Gene position: 1083435-1085801 (Clockwise)

Preceding gene: 218233560

Following gene: 218234932

Centisome position: 19.99

GC content: 37.64

Gene sequence:

>2367_bases
ATGGCTGTGAAGAAATTGTTAAGTGTCTTTTTATCATTCTTGCTATTGCTTTCATTTACTGGAACTTTAGCGCAAGCAGA
AGAAACTGCTTCTATGTCAGTAGAAAAAGCAATTCAAGTATTTAAGCAGCAAGGGAAAACGAAGGGGATTGTGGAAGGAT
ATATTGTCGGATATACGCAAAGTTCTTCTAAATATACGAAGGATCCAGCTAAGTTTGATGATACAAACGTAGCAATTGCA
GATTCGCCAAACGAAACGAATCCAGACAAAATCATGCCCGTTCAGTTGCCAAAAGGTGATGTGAGAACGGCAGTGAATGT
AAAAGATCACCCTGAAAATATCGGGAAGAAAGTTAGTTTGACTGGGACTCTTGAATTATATTTTAGTAACCCAGGTTTAA
AATCAGTAACAGCTTATAAGTTTCAAGGTGAAGGACAAAACCGTGTTAGCGATGTAGTAGCTTCACCGAACGGTGGAGAA
GTTGCTAAAGGAACAGCGGTAACATTAACGACGAATACAGAAGGTGCAACGATTTACTATACGTTAGATGGCTCTAATCC
TACTAATAAAAGTGTTCTTTATAATGGACAAATTATAGTGAATGAAAATAGTGTAGTGAAAGCAATCGCAGAAAAAGAAG
GACTTACTTCTTCAGCAATTTCGACATTTTCATTTATTATCGTAAATAATGAACCAGTTCGTATTCATGACATTCAAGGA
AAATCACATATGTCTCCTTACAACGGGAGGAAAGTAAACAATGTGGAAGGCGTTGTCACAGCGCTTGATAAAAACGGCTT
TTATATAGAAGACAATCAGCCAGATAATGATCCAGCTACTTCAGAAGGTATGTACGTATATAAAAAAGATGCGAATGTAG
CAGTAGGAGATCTTATTCAAGTTGATGGAGTAGTAGAAGAATATGTTGGACCAGGATATGCAGAGCGATTTGAAACAGAC
TTAACGACGACAGAAATTAAGGCGAGTCGCGTTGCTGTAATCGCAAAAGATCAATCTTTGCCAGCACCGATTGTACTTGG
GGAAAACGGTGTGAAAATCCCGGACCAGATTATTGATAATGATGCATTCGGTTTATTTGATCCAAATGAAGATGCAATCG
ACTTTTATGAAAGTATAGAAGGCATGCGTGTTACGATGCCAACACCAAAAATTATTGCACCTCAGAAAAATGGAAATTTA
TATGTAACAGTAAAAAATGGTGGAGATAAAATAGTAACACAATATGGCACACCTCTATTAGATGAAAACCAATTAAACCC
AGAGCGTCTTTCTGTAAAAGTACCTCGCGATTATGTAGCAAAAGTAGGAGATACTTTCACTGGAGATATAACAGGGGTAG
TAGGATATGATTACGGTTCTTTCCGTATTTCGCCAATAACAGAACTGCCAGCTGTAGTGGATGGTGGATTTAAGCAAGTA
GGCGCAAATATTCAGCCACGTCTTGATAAGTTAACGGTTGCTACATATAACATTGAAAACTTCTCAGCGAATAAAAAAGA
AACAACAGATGAAAAGGTAAAAGCGTTAGCGTATTCTATTAAATACAACTTAAAAATGCCAGATATTATCGGTGTAGAGG
AAATGCAAGATAATAACGGATCAATTAATGACGGTACAACAGATGCGTCATTAAGCGCAAAACGTATCATTGATGCAGTG
CTAGAAATTCGTGGACCGAAGTATGAGTATGTAGAAATCGCTCCAAACAATAATCAAGACGGAGGAGCACCAGGAGCGAA
TATTCGCGTCGGCTTCTTCTACAATCCATCACGCGTGAAATTAGCGACGGTACCAAAGTTACTTGATAAAAATGTTGTTC
GTATTGGAGACGAAAATCCATTATTTGAAAGTACACGTAAACCGTTAGCGGTAGAATTTACGTTCCAAGGACAAAACATT
GTTGTCGTTGCAAATCACTTAAACTCAAAACTAGGAGATGCAACGCCATTTGGAAAAGTGCAGCCGCTCGTATTAAAAAG
TGAAGACAAACGAATTCAGTTAGCACAAGAAGTAAATCATTTCGTGCAAGGAATTCAGAAAAAGAATACGAATGCACCAG
TTGTCGTGTTAGGTGATATGAACGATTTCGAATTCTCTAAACCACTAAAAACACTAGAGGGAACAATCTTAAAAGATATG
TTAAACACAGTGCCAAAAGAGAATCGTTACACGTACATTCACGAAGGAAATGCACAAGTGTTAGATCATATTTTAGTAAC
AAATAATATCGCACCACACACAATTGTAGATCCAGTGCACTTAAACTCAAATATAATGAAAGAGCACGGACGTGTAAGCG
ACCATGACCCAGTACTTGCTCAAATTGATTTGAAGAAAGCTTCTTAA

Upstream 100 bases:

>100_bases
TTAAATAAATCTTTTGTAAAATTTGTCGAAAAATAGTTCTATATAACGAATCATTTGTTATGATAGAAATGCTGAGAAAA
TATGAAATAGGGAGAGGAAA

Downstream 100 bases:

>100_bases
AGAAAGGAACGCTTAGGTGACTAAGCGTTCTTTTTTTGCATCGTTATAGAATAGTATAAAGAGATGATTCCTTTTTTTGT
AATCTAATGATAAAATTGAT

Product: endonuclease/exonuclease/phosphatase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 787

Protein sequence:

>788_residues
MAVKKLLSVFLSFLLLLSFTGTLAQAEETASMSVEKAIQVFKQQGKTKGIVEGYIVGYTQSSSKYTKDPAKFDDTNVAIA
DSPNETNPDKIMPVQLPKGDVRTAVNVKDHPENIGKKVSLTGTLELYFSNPGLKSVTAYKFQGEGQNRVSDVVASPNGGE
VAKGTAVTLTTNTEGATIYYTLDGSNPTNKSVLYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFIIVNNEPVRIHDIQG
KSHMSPYNGRKVNNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFETD
LTTTEIKASRVAVIAKDQSLPAPIVLGENGVKIPDQIIDNDAFGLFDPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNL
YVTVKNGGDKIVTQYGTPLLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGSFRISPITELPAVVDGGFKQV
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGSINDGTTDASLSAKRIIDAV
LEIRGPKYEYVEIAPNNNQDGGAPGANIRVGFFYNPSRVKLATVPKLLDKNVVRIGDENPLFESTRKPLAVEFTFQGQNI
VVVANHLNSKLGDATPFGKVQPLVLKSEDKRIQLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDM
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS

Sequences:

>Translated_788_residues
MAVKKLLSVFLSFLLLLSFTGTLAQAEETASMSVEKAIQVFKQQGKTKGIVEGYIVGYTQSSSKYTKDPAKFDDTNVAIA
DSPNETNPDKIMPVQLPKGDVRTAVNVKDHPENIGKKVSLTGTLELYFSNPGLKSVTAYKFQGEGQNRVSDVVASPNGGE
VAKGTAVTLTTNTEGATIYYTLDGSNPTNKSVLYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFIIVNNEPVRIHDIQG
KSHMSPYNGRKVNNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFETD
LTTTEIKASRVAVIAKDQSLPAPIVLGENGVKIPDQIIDNDAFGLFDPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNL
YVTVKNGGDKIVTQYGTPLLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGSFRISPITELPAVVDGGFKQV
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGSINDGTTDASLSAKRIIDAV
LEIRGPKYEYVEIAPNNNQDGGAPGANIRVGFFYNPSRVKLATVPKLLDKNVVRIGDENPLFESTRKPLAVEFTFQGQNI
VVVANHLNSKLGDATPFGKVQPLVLKSEDKRIQLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDM
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS
>Mature_787_residues
AVKKLLSVFLSFLLLLSFTGTLAQAEETASMSVEKAIQVFKQQGKTKGIVEGYIVGYTQSSSKYTKDPAKFDDTNVAIAD
SPNETNPDKIMPVQLPKGDVRTAVNVKDHPENIGKKVSLTGTLELYFSNPGLKSVTAYKFQGEGQNRVSDVVASPNGGEV
AKGTAVTLTTNTEGATIYYTLDGSNPTNKSVLYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFIIVNNEPVRIHDIQGK
SHMSPYNGRKVNNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQVDGVVEEYVGPGYAERFETDL
TTTEIKASRVAVIAKDQSLPAPIVLGENGVKIPDQIIDNDAFGLFDPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLY
VTVKNGGDKIVTQYGTPLLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGSFRISPITELPAVVDGGFKQVG
ANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGSINDGTTDASLSAKRIIDAVL
EIRGPKYEYVEIAPNNNQDGGAPGANIRVGFFYNPSRVKLATVPKLLDKNVVRIGDENPLFESTRKPLAVEFTFQGQNIV
VVANHLNSKLGDATPFGKVQPLVLKSEDKRIQLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDML
NTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLAQIDLKKAS

Specific function: Sugar-nonspecific endonuclease that yields nucleotide 3'-monophosphate products. No 5'-nucleotidase activity was detected, using 5'-AMP as the substrate, in the presence of diverse divalent metals and with various pH values [H]

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TNase-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006146
- InterPro:   IPR006179
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR004843
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR016071
- InterPro:   IPR006021 [H]

Pfam domain/function: PF02872 5_nucleotid_C; PF00746 Gram_pos_anchor; PF00149 Metallophos; PF00565 SNase; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 85981; Mature: 85850

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKKLLSVFLSFLLLLSFTGTLAQAEETASMSVEKAIQVFKQQGKTKGIVEGYIVGYTQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC
SSSKYTKDPAKFDDTNVAIADSPNETNPDKIMPVQLPKGDVRTAVNVKDHPENIGKKVSL
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHCCEEEE
TGTLELYFSNPGLKSVTAYKFQGEGQNRVSDVVASPNGGEVAKGTAVTLTTNTEGATIYY
EEEEEEEECCCCCCCEEEEEEECCCCCHHHHHEECCCCCCEECCEEEEEEECCCCEEEEE
TLDGSNPTNKSVLYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFIIVNNEPVRIHDIQG
EECCCCCCCCEEEECCEEEECCCHHHHHHHHHCCCCHHHHCEEEEEEECCCCEEEEECCC
KSHMSPYNGRKVNNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQ
CCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCEEECCEEE
VDGVVEEYVGPGYAERFETDLTTTEIKASRVAVIAKDQSLPAPIVLGENGVKIPDQIIDN
CCCHHHHHCCCCHHHHHHCCCCEEEECCCEEEEEEECCCCCCCEEECCCCCCCCHHHHCC
DAFGLFDPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLYVTVKNGGDKIVTQYGTPLL
CCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCC
DENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGSFRISPITELPAVVDGGFKQV
CCCCCCHHHEEEECCHHHHHHCCCCCCCCEEEEEEECCCCEEECCHHHCCHHHCCCHHHH
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNG
CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHEEEEEEEECCCCCEECHHHHCCCCC
SINDGTTDASLSAKRIIDAVLEIRGPKYEYVEIAPNNNQDGGAPGANIRVGFFYNPSRVK
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEE
LATVPKLLDKNVVRIGDENPLFESTRKPLAVEFTFQGQNIVVVANHLNSKLGDATPFGKV
EEHHHHHHCCCEEEECCCCCCHHHCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
QPLVLKSEDKRIQLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDM
CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLA
HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECCEECCCHHHHHCCCCCCCCCEEE
QIDLKKAS
EEEEECCC
>Mature Secondary Structure 
AVKKLLSVFLSFLLLLSFTGTLAQAEETASMSVEKAIQVFKQQGKTKGIVEGYIVGYTQ
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC
SSSKYTKDPAKFDDTNVAIADSPNETNPDKIMPVQLPKGDVRTAVNVKDHPENIGKKVSL
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHCCEEEE
TGTLELYFSNPGLKSVTAYKFQGEGQNRVSDVVASPNGGEVAKGTAVTLTTNTEGATIYY
EEEEEEEECCCCCCCEEEEEEECCCCCHHHHHEECCCCCCEECCEEEEEEECCCCEEEEE
TLDGSNPTNKSVLYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFIIVNNEPVRIHDIQG
EECCCCCCCCEEEECCEEEECCCHHHHHHHHHCCCCHHHHCEEEEEEECCCCEEEEECCC
KSHMSPYNGRKVNNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLIQ
CCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEECCCEEECCEEE
VDGVVEEYVGPGYAERFETDLTTTEIKASRVAVIAKDQSLPAPIVLGENGVKIPDQIIDN
CCCHHHHHCCCCHHHHHHCCCCEEEECCCEEEEEEECCCCCCCEEECCCCCCCCHHHHCC
DAFGLFDPNEDAIDFYESIEGMRVTMPTPKIIAPQKNGNLYVTVKNGGDKIVTQYGTPLL
CCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCC
DENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGSFRISPITELPAVVDGGFKQV
CCCCCCHHHEEEECCHHHHHHCCCCCCCCEEEEEEECCCCEEECCHHHCCHHHCCCHHHH
GANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNG
CCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHEEEEEEEECCCCCEECHHHHCCCCC
SINDGTTDASLSAKRIIDAVLEIRGPKYEYVEIAPNNNQDGGAPGANIRVGFFYNPSRVK
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEE
LATVPKLLDKNVVRIGDENPLFESTRKPLAVEFTFQGQNIVVVANHLNSKLGDATPFGKV
EEHHHHHHCCCEEEECCCCCCHHHCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
QPLVLKSEDKRIQLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDM
CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
LNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNSNIMKEHGRVSDHDPVLA
HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECCEECCCHHHHHCCCCCCCCCEEE
QIDLKKAS
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]