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The map label for this gene is yurQ [H]

Identifier: 218234864

GI number: 218234864

Start: 2630123

End: 2630497

Strand: Reverse

Name: yurQ [H]

Synonym: BCB4264_A2724

Alternate gene names: 218234864

Gene position: 2630497-2630123 (Counterclockwise)

Preceding gene: 218234557

Following gene: 218233665

Centisome position: 48.54

GC content: 30.4

Gene sequence:

>375_bases
TTGATTAAAATTAATATTCCTGAAGCTGATGTTTCAATTACTGAACGTAAACAAGTTATTAAAGGAGACGAGCCAATCAT
TACTCCAATTAATGGATTTATCGATTTCCACTTGTTCCCTAGAGATAAAGGCGGCATTTTTATGTTTTACAATATTAATG
ACGAACTTCTTTTCGTAGGTAAAGCTCGTAAAATTAGACAACGTATTAAGAAGCATTTTGAAGATAATGTTTCACCAATT
AAAAATCACCGTGATGAAGTATACCGCATTGATGCATGTATCGTAGAAGATCCAACAGAAAGAGAAATTTACGAAACATA
TATCATTAATGAATACAAAGCGAAATATAACGTTGATAAAGTATTCTACAAATAA

Upstream 100 bases:

>100_bases
TAATATTTGAATTATAAAATGAAATATGCCTCTGAACATAGCTTTTCTTACTTATGTATGCTATTATTTATCTTTATAAT
AAAAGAGGACGTGAATGAAC

Downstream 100 bases:

>100_bases
TCAACATTAATAAAAAACAATCCTAGCTAATATGCCAGGATTGTTTTTTATTTAGATTTATTCTTCATATCTTTCTCCTT
TTTTCAAATGATTAGCAGCA

Product: GIY-YIG catalytic domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MIKINIPEADVSITERKQVIKGDEPIITPINGFIDFHLFPRDKGGIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPI
KNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDKVFYK

Sequences:

>Translated_124_residues
MIKINIPEADVSITERKQVIKGDEPIITPINGFIDFHLFPRDKGGIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPI
KNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDKVFYK
>Mature_124_residues
MIKINIPEADVSITERKQVIKGDEPIITPINGFIDFHLFPRDKGGIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPI
KNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDKVFYK

Specific function: The Uvrabc Repair System Catalyzes The Recognition And Processing Of DNA Lesions. Uvrc Both Incises The 5' And 3' Sides Of The Lesion. The N-Terminal Half Is Responsible For The 3' Incision And The C-Terminal Half Is Responsible For The 5' Incision. [C]

COG id: COG0322

COG function: function code L; Nuclease subunit of the excinuclease complex

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014527
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 14784; Mature: 14784

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKINIPEADVSITERKQVIKGDEPIITPINGFIDFHLFPRDKGGIFMFYNINDELLFVG
CEEEECCCCCCCHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCEEEEEECCCCEEEEE
KARKIRQRIKKHFEDNVSPIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDK
CCHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEEEECCCCCHHHHHHHEEECCCCCCCCEE
VFYK
EEEC
>Mature Secondary Structure
MIKINIPEADVSITERKQVIKGDEPIITPINGFIDFHLFPRDKGGIFMFYNINDELLFVG
CEEEECCCCCCCHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCEEEEEECCCCEEEEE
KARKIRQRIKKHFEDNVSPIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDK
CCHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEEEECCCCCHHHHHHHEEECCCCCCCCEE
VFYK
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]