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The map label for this gene is dnaB [H]

Identifier: 218234527

GI number: 218234527

Start: 3495917

End: 3497221

Strand: Reverse

Name: dnaB [H]

Synonym: BCB4264_A3587

Alternate gene names: 218234527

Gene position: 3497221-3495917 (Counterclockwise)

Preceding gene: 218232764

Following gene: 218233921

Centisome position: 64.54

GC content: 35.17

Gene sequence:

>1305_bases
ATGAGTCAAATTATTAATCTTGAAAGTGAAATACTCCAAATTATTCGACAGTCATATCATCGCAAAGGTTTACATTGTGG
TGAGCGTGCAGGCAAATGTATAGAAGAAAACCAACGAATTATGAATCCTAACACGGGAGAATATAAGTCGATAGGAGAGC
TTTATCAGTCCCAACAAGATAGTATCGCTACACCATTATTAACATTGAATGAGTTCTATCAATTAAAGAACAGTAAAGCT
TTTTCCATTGAAGATAATGGTGTTCAAGATACGTTTGCTGTTGTAACAAAACATGGAGCACGAGTTACCCTTACAAGAAA
TCATCCAGTACTAACATTCGATGGATGGAAAGAAGTAGATGCACTCCGTATCGGAGAAAGAATTGCTACACCTAAGTTCT
TAACTGTGTATGGCACAAAACAAGTAGAAAAGAATAAACTTCGAATTCTTGCATATATGCTCGCTGCTGGGCGTTTAAAT
AAGAATAGCATTAGCTTCCAAATACGTTATGAAGGTGTTGGTGAGTCGTTGCAGAAATCTTGTGAGGCAATTGGTATTAC
AACGTATTATGAGCATCATAAGAAGTCGACAGTCTATCTAATGGACTTTAGAAGTTTTGAGTTTTATAGGGAGATAGAAG
AAAAAAAAATCCCTTCATTTATTTACGAGTTGGATAGAGATCACTTAGCGTTCTTTTTAGGAAGTCTGTATTCGGCAGGT
GGTTGGTTTTGCGCCGGACGTATTAGTGAAATTGGGTATGCTACTAAGTGTCGGCAATTTGCATTAAATCTAAAACACTT
ACTATTACGTTTTGGTATCCAAACGAATTTACTTCAAAAAGAAATGAATAATTCTGTTTATTACCATCTTATGGTTTATC
ACTGTTCCTCTATTTTATTATTCCTCGAACATTTAGCTACACCAGAGCGTAATTATGAAGAAGTCCAACAAAGAGCACTG
AAAATGAATCCTTCTGAACCAACACTCCCTAAAGAAGTATGGAAATACATTGAAAAGGAACGAATTGTTAAAGGAATGAC
GAAAGCTGAAGTGGTAGGAAAGGGTAATCGTCGTTATCGTACAGAAAAAGGTATATCTTTAAGTAATGCCCGTGAATATG
CAGAGAACTTACAATTTGCAACGTTACATTATTTAATTGATTCTCATGTATTATGGGAAGAAGTAGTAGAAATCATTCCT
TATGGTAAGAGACAGACTTATGATGTCTTTGTTCCAGAGACTCATAACTTAGTTGTTGAAGATATTCTTGTATTTAGTCC
ATGTACAAATGTTTTGGATAGATAG

Upstream 100 bases:

>100_bases
AAGATGAATGCAAGAAGTGCACTTGGTGGAGAAGCTAAAATATTAAGCCCTTACTAAGTTGCTACACATCTAGAAGGTAT
TAGAGAAGAGGATTGGAAAT

Downstream 100 bases:

>100_bases
AAATTGAATACAAAAATGAAAAAAAGAGTAAGTGTTGCTACTATGATTTCTAACATCTTTATGATATATAACACCTTTGT
AATGCCCCTTCAGGTAATCA

Product: transcriptional regulator, XRE family, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSQIINLESEILQIIRQSYHRKGLHCGERAGKCIEENQRIMNPNTGEYKSIGELYQSQQDSIATPLLTLNEFYQLKNSKA
FSIEDNGVQDTFAVVTKHGARVTLTRNHPVLTFDGWKEVDALRIGERIATPKFLTVYGTKQVEKNKLRILAYMLAAGRLN
KNSISFQIRYEGVGESLQKSCEAIGITTYYEHHKKSTVYLMDFRSFEFYREIEEKKIPSFIYELDRDHLAFFLGSLYSAG
GWFCAGRISEIGYATKCRQFALNLKHLLLRFGIQTNLLQKEMNNSVYYHLMVYHCSSILLFLEHLATPERNYEEVQQRAL
KMNPSEPTLPKEVWKYIEKERIVKGMTKAEVVGKGNRRYRTEKGISLSNAREYAENLQFATLHYLIDSHVLWEEVVEIIP
YGKRQTYDVFVPETHNLVVEDILVFSPCTNVLDR

Sequences:

>Translated_434_residues
MSQIINLESEILQIIRQSYHRKGLHCGERAGKCIEENQRIMNPNTGEYKSIGELYQSQQDSIATPLLTLNEFYQLKNSKA
FSIEDNGVQDTFAVVTKHGARVTLTRNHPVLTFDGWKEVDALRIGERIATPKFLTVYGTKQVEKNKLRILAYMLAAGRLN
KNSISFQIRYEGVGESLQKSCEAIGITTYYEHHKKSTVYLMDFRSFEFYREIEEKKIPSFIYELDRDHLAFFLGSLYSAG
GWFCAGRISEIGYATKCRQFALNLKHLLLRFGIQTNLLQKEMNNSVYYHLMVYHCSSILLFLEHLATPERNYEEVQQRAL
KMNPSEPTLPKEVWKYIEKERIVKGMTKAEVVGKGNRRYRTEKGISLSNAREYAENLQFATLHYLIDSHVLWEEVVEIIP
YGKRQTYDVFVPETHNLVVEDILVFSPCTNVLDR
>Mature_433_residues
SQIINLESEILQIIRQSYHRKGLHCGERAGKCIEENQRIMNPNTGEYKSIGELYQSQQDSIATPLLTLNEFYQLKNSKAF
SIEDNGVQDTFAVVTKHGARVTLTRNHPVLTFDGWKEVDALRIGERIATPKFLTVYGTKQVEKNKLRILAYMLAAGRLNK
NSISFQIRYEGVGESLQKSCEAIGITTYYEHHKKSTVYLMDFRSFEFYREIEEKKIPSFIYELDRDHLAFFLGSLYSAGG
WFCAGRISEIGYATKCRQFALNLKHLLLRFGIQTNLLQKEMNNSVYYHLMVYHCSSILLFLEHLATPERNYEEVQQRALK
MNPSEPTLPKEVWKYIEKERIVKGMTKAEVVGKGNRRYRTEKGISLSNAREYAENLQFATLHYLIDSHVLWEEVVEIIPY
GKRQTYDVFVPETHNLVVEDILVFSPCTNVLDR

Specific function: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity [H]

COG id: COG1372

COG function: function code L; Intein/homing endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SF4 helicase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007692
- InterPro:   IPR007694
- InterPro:   IPR007693
- InterPro:   IPR016136
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR000788 [H]

Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 50346; Mature: 50215

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50817 INTEIN_N_TER ; PS50819 INTEIN_ENDONUCLEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIINLESEILQIIRQSYHRKGLHCGERAGKCIEENQRIMNPNTGEYKSIGELYQSQQD
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
SIATPLLTLNEFYQLKNSKAFSIEDNGVQDTFAVVTKHGARVTLTRNHPVLTFDGWKEVD
HHHCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCHHHH
ALRIGERIATPKFLTVYGTKQVEKNKLRILAYMLAAGRLNKNSISFQIRYEGVGESLQKS
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHH
CEAIGITTYYEHHKKSTVYLMDFRSFEFYREIEEKKIPSFIYELDRDHLAFFLGSLYSAG
HHHCCCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
GWFCAGRISEIGYATKCRQFALNLKHLLLRFGIQTNLLQKEMNNSVYYHLMVYHCSSILL
CEEEECHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHHHHHHHH
FLEHLATPERNYEEVQQRALKMNPSEPTLPKEVWKYIEKERIVKGMTKAEVVGKGNRRYR
HHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEE
TEKGISLSNAREYAENLQFATLHYLIDSHVLWEEVVEIIPYGKRQTYDVFVPETHNLVVE
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHH
DILVFSPCTNVLDR
HHHHHCCHHHHHCC
>Mature Secondary Structure 
SQIINLESEILQIIRQSYHRKGLHCGERAGKCIEENQRIMNPNTGEYKSIGELYQSQQD
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
SIATPLLTLNEFYQLKNSKAFSIEDNGVQDTFAVVTKHGARVTLTRNHPVLTFDGWKEVD
HHHCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCHHHH
ALRIGERIATPKFLTVYGTKQVEKNKLRILAYMLAAGRLNKNSISFQIRYEGVGESLQKS
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHH
CEAIGITTYYEHHKKSTVYLMDFRSFEFYREIEEKKIPSFIYELDRDHLAFFLGSLYSAG
HHHCCCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
GWFCAGRISEIGYATKCRQFALNLKHLLLRFGIQTNLLQKEMNNSVYYHLMVYHCSSILL
CEEEECHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHHHHHHHH
FLEHLATPERNYEEVQQRALKMNPSEPTLPKEVWKYIEKERIVKGMTKAEVVGKGNRRYR
HHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEE
TEKGISLSNAREYAENLQFATLHYLIDSHVLWEEVVEIIPYGKRQTYDVFVPETHNLVVE
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHH
DILVFSPCTNVLDR
HHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9748659; 10231563 [H]