Click here to switch to the map view.

The map label for this gene is ccdA2 [H]

Identifier: 218234494

GI number: 218234494

Start: 3681598

End: 3682305

Strand: Reverse

Name: ccdA2 [H]

Synonym: BCB4264_A3768

Alternate gene names: 218234494

Gene position: 3682305-3681598 (Counterclockwise)

Preceding gene: 218234398

Following gene: 218231990

Centisome position: 67.95

GC content: 35.31

Gene sequence:

>708_bases
ATGCAAGATATTAGTATTTTTTTAGCGTTTGGCGCCGGGTTCTTATCATTTATTTCCCCATGTTGCTTACCGCTTTATCC
GGCATTTTTATCGTACATAACAGGTATGTCGGTTTCTGAATTGAAAGAAGAAAATGCAATGCTTCGCAAAAGAAGTATGA
TACATACAGCGTTTTTCTTACTTGGATTTTCAATTATATTTATTGCAATTGGATTTGGTACAAGTTTTATTGGAGGAATC
TTTACTGACTATAAAGATTTAATCAGACAGTTAGGTGGTATATTTATCATCGTGTTCGGCTTAATTATTGTCGGGGTGTT
TAAGCCGAAATTTTTAATGCAAGACCGTAAATTTACATTTAAAAATCGTCCAAGTGGCTATTTTGGATCAGTACTAATTG
GATTAGCCTTTGCAGCAGGGTGGACGCCATGTACCGGACCAATTCTAGTGTCGGTAATTGGATTAGCAGCAACAAACCCA
GAATCAGCAATGATTTACATGATTGCTTACATACTTGGATTTGCTATCCCGTTTTTCGTACTGTCATTCTTTATTACGAA
AATGTCTTGGATTAAAAGAAATAGTATGGCCTTCATGAAAGTCGGAGGATATATTATGATTGTTATGGGGGTCTTCCTAT
ACTTTAACTGGATGACGAAAATTATCGTATATTTCTCAAGTTTATTTGGTGGTTTTACCGGTTTTTAG

Upstream 100 bases:

>100_bases
GTACTTTTTTCTTATTGCCACGTTGTAAAAGTGATTTCACGAATTGTTCATAGTATTTTTATGTGTTTTTGTTACAATAT
TTAGGGAGAGGAGTGGAATG

Downstream 100 bases:

>100_bases
TATTATTCTGCGAAAATGTTGGAAATACTAACGGAAAAGCATATAATGAAAGTATATTTTGCATATAGCCACAAAAAAGG
ATGAGAAAATATGAACATAG

Product: cytochrome c-type biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIGGI
FTDYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTFKNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNP
ESAMIYMIAYILGFAIPFFVLSFFITKMSWIKRNSMAFMKVGGYIMIVMGVFLYFNWMTKIIVYFSSLFGGFTGF

Sequences:

>Translated_235_residues
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIGGI
FTDYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTFKNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNP
ESAMIYMIAYILGFAIPFFVLSFFITKMSWIKRNSMAFMKVGGYIMIVMGVFLYFNWMTKIIVYFSSLFGGFTGF
>Mature_235_residues
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIGGI
FTDYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTFKNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNP
ESAMIYMIAYILGFAIPFFVLSFFITKMSWIKRNSMAFMKVGGYIMIVMGVFLYFNWMTKIIVYFSSLFGGFTGF

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26193; Mature: 26193

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGFSIIFIAIGFGTSFIGGIFTDYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
KNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNPESAMIYMIAYILGFAIPFFV
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LSFFITKMSWIKRNSMAFMKVGGYIMIVMGVFLYFNWMTKIIVYFSSLFGGFTGF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQDISIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGFSIIFIAIGFGTSFIGGIFTDYKDLIRQLGGIFIIVFGLIIVGVFKPKFLMQDRKFTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
KNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNPESAMIYMIAYILGFAIPFFV
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LSFFITKMSWIKRNSMAFMKVGGYIMIVMGVFLYFNWMTKIIVYFSSLFGGFTGF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]