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The map label for this gene is yvbU [H]

Identifier: 218234493

GI number: 218234493

Start: 1832481

End: 1833272

Strand: Direct

Name: yvbU [H]

Synonym: BCB4264_A1920

Alternate gene names: 218234493

Gene position: 1832481-1833272 (Clockwise)

Preceding gene: 218236141

Following gene: 218235411

Centisome position: 33.82

GC content: 37.63

Gene sequence:

>792_bases
ATGACGCAGCCAGCTGTAAGTCATGCCATTTCAAGTATTGAGTCAGAGTTAGGAGTTACGATTCTTATACGTGATAAACG
ACAAGGATTACTCGTTACGGATGTAGGAAACAGAATTCTTGTACATATTAGAGAGATTTTGAACGGTGTAGAGAAGATTG
AACAAGAAGTTGCGATGGAGAAAGGACACGAAGTGGGGACGATTCGAATTGGGAGTTTTCCGAGTGCTTCTGCACATTTC
TTACCGAAAATGATAAACCATTTTAAGGAGAAGTATCCGAGCTTAGAGGTCGTTCTTTGTGAAGGAACAATTAAAGAAGT
TGAAGATTGGTTAATATCGAGGGTTGTTGATATAGGAATTGTTATTTTGCCTAATAAAGAGATGGAGATTGTCCCGTTAA
CGAAGGGAAAAATGGTTGCTATCTTAAGAGAGGATCATCCTCTTTGTAAGAAGGACTCTATTACAATTCGTGATTTGGAG
AATGAACCGATCATATTATGTAAGGGCGGATACGAACCACCCATCATTGATATGTTTAAACAAGCCAACGTACCACTTCG
AGCTGAGTATGTAATTTCTACCGTTACTACAGCTTTAAATATGATTCAAGAAGGATTAGGCATTGCAATATTAGCTGAAT
TATCTTTAACGAATTTACCACAGAATGTGCAAACGAGAGAATTGGAACCGCAAATATGGAGAGAAATTGCTTTAGCTGTT
CCTTCATTAAAGGATTCTTCAATCGCTGTACAGCTATTTATTGAAGAATTTCAAGCGCTATTTGCAGAATAA

Upstream 100 bases:

>100_bases
TAAGGAGTATAAGTGATTAGTTATGACTATTACACAACTGCAAGTATTAATAAAAACTATTGAGTTAGGTAGTTTTACGA
AGGCTGCCAGGGTGTTAAAT

Downstream 100 bases:

>100_bases
AAAGGGGTGTCTCATATATCATAATGGGGCACTTTTTAATTTGCTTATAAAAAATCTATGAAAAGGATTGACTTATTTTT
TAGTTGTAACTATAATGATT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTQPAVSHAISSIESELGVTILIRDKRQGLLVTDVGNRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHF
LPKMINHFKEKYPSLEVVLCEGTIKEVEDWLISRVVDIGIVILPNKEMEIVPLTKGKMVAILREDHPLCKKDSITIRDLE
NEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPQNVQTRELEPQIWREIALAV
PSLKDSSIAVQLFIEEFQALFAE

Sequences:

>Translated_263_residues
MTQPAVSHAISSIESELGVTILIRDKRQGLLVTDVGNRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHF
LPKMINHFKEKYPSLEVVLCEGTIKEVEDWLISRVVDIGIVILPNKEMEIVPLTKGKMVAILREDHPLCKKDSITIRDLE
NEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPQNVQTRELEPQIWREIALAV
PSLKDSSIAVQLFIEEFQALFAE
>Mature_262_residues
TQPAVSHAISSIESELGVTILIRDKRQGLLVTDVGNRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFL
PKMINHFKEKYPSLEVVLCEGTIKEVEDWLISRVVDIGIVILPNKEMEIVPLTKGKMVAILREDHPLCKKDSITIRDLEN
EPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPQNVQTRELEPQIWREIALAVP
SLKDSSIAVQLFIEEFQALFAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=224, Percent_Identity=25.4464285714286, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790399, Length=221, Percent_Identity=28.5067873303167, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787530, Length=220, Percent_Identity=22.7272727272727, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=180, Percent_Identity=26.1111111111111, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=218, Percent_Identity=26.1467889908257, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787879, Length=221, Percent_Identity=24.4343891402715, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=244, Percent_Identity=23.3606557377049, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789204, Length=265, Percent_Identity=24.5283018867925, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788481, Length=252, Percent_Identity=25.3968253968254, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786401, Length=179, Percent_Identity=30.1675977653631, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29347; Mature: 29216

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPAVSHAISSIESELGVTILIRDKRQGLLVTDVGNRILVHIREILNGVEKIEQEVAME
CCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPSLEVVLCEGTIKEVEDWLISRVVDIGI
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCE
VILPNKEMEIVPLTKGKMVAILREDHPLCKKDSITIRDLENEPIILCKGGYEPPIIDMFK
EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHH
QANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPQNVQTRELEPQIWREIALAV
HCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHC
PSLKDSSIAVQLFIEEFQALFAE
CCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQPAVSHAISSIESELGVTILIRDKRQGLLVTDVGNRILVHIREILNGVEKIEQEVAME
CCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPSLEVVLCEGTIKEVEDWLISRVVDIGI
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCE
VILPNKEMEIVPLTKGKMVAILREDHPLCKKDSITIRDLENEPIILCKGGYEPPIIDMFK
EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHH
QANVPLRAEYVISTVTTALNMIQEGLGIAILAELSLTNLPQNVQTRELEPQIWREIALAV
HCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHC
PSLKDSSIAVQLFIEEFQALFAE
CCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]