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The map label for this gene is ydeE [H]

Identifier: 218234459

GI number: 218234459

Start: 1138940

End: 1139842

Strand: Direct

Name: ydeE [H]

Synonym: BCB4264_A1170

Alternate gene names: 218234459

Gene position: 1138940-1139842 (Clockwise)

Preceding gene: 218231112

Following gene: 218235960

Centisome position: 21.02

GC content: 37.65

Gene sequence:

>903_bases
ATGGAAAGCTATGAAACACAAATTCAAAGGTCAATTGATTATATTGAGGAAGATGTAATGGAAAAACAAACGCTGCGTAA
TTTAGCGCGGGTTGCAGGTTTTTCTGAGTCTCATTTTCATCGTGTATTTCAGGCGTTAGTAGGTGATACGGTAATGGAGT
ATGTTCGAAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAGTTATTGATATCGCGTTTGAA
CATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATCGAAAACA
AGAAATCGAAACACCGATGTATTACAGAGTAAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGCATACAAATGG
AATATCGTATTGTAAATAAACCAGAATTTTTAGTGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAAAAACCAT
CAAGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACGACGATTCCGAATCGTAAAGATACGAGCCA
ATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGAGACTTCACTTATATTATCGGAATGGAAGTTACAG
ACTTTGAAAATGTACCAAATGAAATTGCAAAGCGTACTTTCCCGGCAGCAACATATGCAGTATTTACAACGCCGAAAGTT
CCTCATGAAGAAATGGTATCGTCTATCCACCAAACTTGGAATGCAGTATTCTCAGAATGGTTTCCGCATTCAGGCTATGA
ACATTGCGGAGTTACAGAGTTTGAATTATACGATGAGCGTTGCCACGAAGATAAGAGTGAGTTTGCACAAGTAGAGCTTT
GGATACCGGTGAAGAAAAAATAA

Upstream 100 bases:

>100_bases
TATAAAAAAGTTACAATTTTTTATGGAATTATAGTAAAAAACGTCAAGAATTGGATTGCGTTCTCTTTTATCATAATACA
TATAAGGCGGGTGAACAGAG

Downstream 100 bases:

>100_bases
TAGGGTAAGAGCGAATCATTGGGAGATGGTTCGCTTTTTCATAAAAGGAGAAATGGGAAAATGTTCAAAAAACTAGAATG
TGTATCTATACATACGAAAG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARVAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKVIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYRVNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK

Sequences:

>Translated_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARVAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKVIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYRVNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK
>Mature_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARVAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKVIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYRVNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=38.3838383838384, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=34.9514563106796, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35363; Mature: 35363

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARVAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKVIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYRVNVK
HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECH
QRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEEECCCCEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHEEEEEEEECCCC
>Mature Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARVAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKVIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYRVNVK
HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECH
QRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEEECCCCEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]