Click here to switch to the map view.

The map label for this gene is yhbA [H]

Identifier: 218233430

GI number: 218233430

Start: 552566

End: 553708

Strand: Direct

Name: yhbA [H]

Synonym: BCB4264_A0582

Alternate gene names: 218233430

Gene position: 552566-553708 (Clockwise)

Preceding gene: 218233246

Following gene: 218232389

Centisome position: 10.2

GC content: 39.2

Gene sequence:

>1143_bases
GTGGATTTTGAACAATTAAAGCAAGATGTAATTGCGTATAGTAAAACAATTGGCATAGATAAAATAGGCTTTGCGAGCGC
TTCTCCTTTTGAGGAATTAAAGCAGCGCTTAATCCAGCAACAACAATTAAATTATCAATCTGGATTTGAAGAGCCTGATA
TAGAGAAGAGAACGAATCCGCAACTGTTATTACCAGGTGCTAAATCAATTATTGCGATTGCTTTAGCATATCCTTCAAAA
TTAAAAAATGCACCATTAAGTAAGCGTGGAGAACGCCGTGGGATTTTTTGTCGTGCTTCTTGGGGACAAGATTATCATCT
TGTTTTACGAGATCGTTTGCAAAAATTAGAGGCATATTTAATTGAAAAACTTCCTGATATAGAAGTGAAGTCCATGGTTG
ATACAGGTGAATTAAGTGATCGAGCTGTATCAGAGCGTGCTGGTATTGGATGGAGCGGTAAAAACTGCTCTATTATTACA
CCTGAATTTGGTTCGTACGTATACTTAGGGGAAATGATTACAAATGTTCCATTCCCGCCAGATAAGCCGATAGAAGATCA
ATGCGGGGGCTGTACGAAATGTATCGATATTTGTCCTACCGGTGCTTTAATACAGGGGGGACAGTTAGATTCGAAGAAGT
GCATTGCGTTTTTAACACAAACGAAAGGATTCCTACCTGAAGAATATCGCGATAAAATAGGAAATCGCATATATGGATGT
GATACGTGTCAGACTGTTTGTCCGAAAAATAAAGGAATGGATTTTCATAATCATCCTGAGATGGAGCCGGATCCTGAGCT
AGTTAAACCATTATTAACGCCACTTTTAACAATTAGTAATCGTGATTTTAAAGAGAAATATGGGATTATGTCAGGGTCAT
GGAGAGGGAAAAAGCCACTGCAAAGAAATGCGATTTTAGCATTAGCACATTTTAAAGAAGCATCGGCAATTCCAGATTTA
ATTGGTGTTATGAAAGATGATCCAAGACCGGTACTACGCGGAACGGCAGCATGGGCACTTGGGAAAATTGGCGGAGATGG
AGTAGGCGAAGCGATTGAGAAAGCGATGGAACGTGAGAAAGATGAAGAAGTGATTTATGAAATGAATCGCGGGCTTGAAT
TGTTAGCACAGAAAAAAGAGTAG

Upstream 100 bases:

>100_bases
ACATGCGAAAATAGAAGTAAATAATAGTATTCCAAACGTGAATTACTAACCAATAGAGTGGTTACATAAGGGGTGGATTC
ATCTGAGGAGGCGATTAAGA

Downstream 100 bases:

>100_bases
ATAATATTTCCCTTTTTCATATTGTAATATGGGAGGGAGACAGAATGGTTGTAAAAACGAAGATTGAAAACCAAGTACAA
CAATTTTTAGCATATATAAC

Product: putative iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDFEQLKQDVIAYSKTIGIDKIGFASASPFEELKQRLIQQQQLNYQSGFEEPDIEKRTNPQLLLPGAKSIIAIALAYPSK
LKNAPLSKRGERRGIFCRASWGQDYHLVLRDRLQKLEAYLIEKLPDIEVKSMVDTGELSDRAVSERAGIGWSGKNCSIIT
PEFGSYVYLGEMITNVPFPPDKPIEDQCGGCTKCIDICPTGALIQGGQLDSKKCIAFLTQTKGFLPEEYRDKIGNRIYGC
DTCQTVCPKNKGMDFHNHPEMEPDPELVKPLLTPLLTISNRDFKEKYGIMSGSWRGKKPLQRNAILALAHFKEASAIPDL
IGVMKDDPRPVLRGTAAWALGKIGGDGVGEAIEKAMEREKDEEVIYEMNRGLELLAQKKE

Sequences:

>Translated_380_residues
MDFEQLKQDVIAYSKTIGIDKIGFASASPFEELKQRLIQQQQLNYQSGFEEPDIEKRTNPQLLLPGAKSIIAIALAYPSK
LKNAPLSKRGERRGIFCRASWGQDYHLVLRDRLQKLEAYLIEKLPDIEVKSMVDTGELSDRAVSERAGIGWSGKNCSIIT
PEFGSYVYLGEMITNVPFPPDKPIEDQCGGCTKCIDICPTGALIQGGQLDSKKCIAFLTQTKGFLPEEYRDKIGNRIYGC
DTCQTVCPKNKGMDFHNHPEMEPDPELVKPLLTPLLTISNRDFKEKYGIMSGSWRGKKPLQRNAILALAHFKEASAIPDL
IGVMKDDPRPVLRGTAAWALGKIGGDGVGEAIEKAMEREKDEEVIYEMNRGLELLAQKKE
>Mature_380_residues
MDFEQLKQDVIAYSKTIGIDKIGFASASPFEELKQRLIQQQQLNYQSGFEEPDIEKRTNPQLLLPGAKSIIAIALAYPSK
LKNAPLSKRGERRGIFCRASWGQDYHLVLRDRLQKLEAYLIEKLPDIEVKSMVDTGELSDRAVSERAGIGWSGKNCSIIT
PEFGSYVYLGEMITNVPFPPDKPIEDQCGGCTKCIDICPTGALIQGGQLDSKKCIAFLTQTKGFLPEEYRDKIGNRIYGC
DTCQTVCPKNKGMDFHNHPEMEPDPELVKPLLTPLLTISNRDFKEKYGIMSGSWRGKKPLQRNAILALAHFKEASAIPDL
IGVMKDDPRPVLRGTAAWALGKIGGDGVGEAIEKAMEREKDEEVIYEMNRGLELLAQKKE

Specific function: Unknown

COG id: COG1600

COG function: function code C; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HEAT-like PBS-type repeats [H]

Homologues:

Organism=Escherichia coli, GI1790608, Length=351, Percent_Identity=31.0541310541311, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004453
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR013542
- InterPro:   IPR009051
- InterPro:   IPR004155 [H]

Pfam domain/function: PF08331 DUF1730; PF03130 HEAT_PBS [H]

EC number: NA

Molecular weight: Translated: 42424; Mature: 42424

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFEQLKQDVIAYSKTIGIDKIGFASASPFEELKQRLIQQQQLNYQSGFEEPDIEKRTNP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QLLLPGAKSIIAIALAYPSKLKNAPLSKRGERRGIFCRASWGQDYHLVLRDRLQKLEAYL
CEECCCCHHHHHHHHHCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
IEKLPDIEVKSMVDTGELSDRAVSERAGIGWSGKNCSIITPEFGSYVYLGEMITNVPFPP
HHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEHHHHHCCCCCC
DKPIEDQCGGCTKCIDICPTGALIQGGQLDSKKCIAFLTQTKGFLPEEYRDKIGNRIYGC
CCCCHHHCCCHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEECC
DTCQTVCPKNKGMDFHNHPEMEPDPELVKPLLTPLLTISNRDFKEKYGIMSGSWRGKKPL
CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCC
QRNAILALAHFKEASAIPDLIGVMKDDPRPVLRGTAAWALGKIGGDGVGEAIEKAMEREK
HHHHEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
DEEVIYEMNRGLELLAQKKE
HHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MDFEQLKQDVIAYSKTIGIDKIGFASASPFEELKQRLIQQQQLNYQSGFEEPDIEKRTNP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QLLLPGAKSIIAIALAYPSKLKNAPLSKRGERRGIFCRASWGQDYHLVLRDRLQKLEAYL
CEECCCCHHHHHHHHHCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
IEKLPDIEVKSMVDTGELSDRAVSERAGIGWSGKNCSIITPEFGSYVYLGEMITNVPFPP
HHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEHHHHHCCCCCC
DKPIEDQCGGCTKCIDICPTGALIQGGQLDSKKCIAFLTQTKGFLPEEYRDKIGNRIYGC
CCCCHHHCCCHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEECC
DTCQTVCPKNKGMDFHNHPEMEPDPELVKPLLTPLLTISNRDFKEKYGIMSGSWRGKKPL
CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCC
QRNAILALAHFKEASAIPDLIGVMKDDPRPVLRGTAAWALGKIGGDGVGEAIEKAMEREK
HHHHEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
DEEVIYEMNRGLELLAQKKE
HHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]