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The map label for this gene is ydaM [C]

Identifier: 218233425

GI number: 218233425

Start: 4058621

End: 4059913

Strand: Reverse

Name: ydaM [C]

Synonym: BCB4264_A4153

Alternate gene names: 218233425

Gene position: 4059913-4058621 (Counterclockwise)

Preceding gene: 218235993

Following gene: 218230885

Centisome position: 74.92

GC content: 31.25

Gene sequence:

>1293_bases
ATGAACATACTACATTTTTTATTAGAGAATACGGTTTTCCAAAATGTGTTACAAGATCTGCAGTTAAATGTCCTTTATAT
AGAAAATGGATGTAAACATCAACAAACGATAGAAAATATCCATCCAAAATGTATGTTTATAGCAAATAGTTTTGAAGAGG
GCGAACTATTATTTCAAAGAACGAAACCGCACATTATAATTATGTATGTAACAGATTATTCTCAAATAAAATATATAAAG
AATATGTATACCTCGCAAAGTACATTCATTGTCATTTGGGATCAACAAATAACAAAAGAATTTACAGATGTACTTGCATT
AGGAATACGTAATATTGTAATAGCCCCTGTAACTCCGCAAGCAGTGTTAGAAGAAGTGAATAAGAGTTTGTATCAACTTT
CTTTGGTAAGGCAAGTTAGTTTACAACAGGAACTGCTTCAAACGATGTTTGATTTTCAAAATGATTTATTATTTATAGTA
GAAGATGATGAAATTGTTGATTGTAATACAAATTTTTTAACGTTTTTCGGATATGAAAATTTGTTTGCCTATCGCGAGCA
ACATTTAGTATTTGCTGAACATTTTATTAGAGAAAATGGATACTACTCGACGACGCATGATATAACATGGCTAGACGATA
CTTTATCAAGCGGTAGAAGAATTAAGATGTCAAATTATGAAGGGGCAGTATCTACTTTTCTATTACGTGCGACACCATTG
CCAGAAGATTTATCAAGATTTATTGTAAAGTGCACGGAAATTACAGAATTAGATGAAATCTATCAAGAACAAGAAAGACT
TGCTATGATAGATTCATTGACAGAGATTTATAATCGTTTAAAGTTTCAACAAATACTAGAGGTAGAATGGGAAAAGGTAA
TACGTAATGATGAGAAAATAGCAATTATTTTATTTGATATAGATAATTTTAAAACAGTTAATGACACATATGGTCATGAT
TTTGGCGATTTGGCATTAATACAACTTGCAGAGCTTATGAAATCTAAAGTGGAGCAGCAACATGTATTTGCAAGATGGGG
AGGGGAAGAATTCATTATATTAGTGACAAATACAGTAGAAAAGGAAGCATTTCAAGTTGCGGAATCATTACGATTCTTCA
TTGAAACAAAGCAATTCACTGGAATTTCGAAGTTAACAGCTAGCTTTGGAGTTGCGTTATATGAACAAGGAACTACAAGA
GAAGAATTAATGCAACGAGCGGATATTGCATTATATGAAGCGAAAAAAAATGGAAAGAATCAAGTATGTGTGTATAGAAA
AGAAAAAATGTGA

Upstream 100 bases:

>100_bases
TGTATTTCTCACAAATTAAAGTTTATTGGAGAACAGTCTTTTAAAAATATTTGTGAGGAATTCAGTAGAACAAGATATAT
GAAGTGAGTGAAGACTAGTG

Downstream 100 bases:

>100_bases
TTTTTCGCAACAAATTGTTGCGATTTTTTTTTATTGTTTGATAATAGAATAGGGGGACAATTTTTAGCGAAGGAATTATG
GAGGATTAATATGATAAAAA

Product: putative sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MNILHFLLENTVFQNVLQDLQLNVLYIENGCKHQQTIENIHPKCMFIANSFEEGELLFQRTKPHIIIMYVTDYSQIKYIK
NMYTSQSTFIVIWDQQITKEFTDVLALGIRNIVIAPVTPQAVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFQNDLLFIV
EDDEIVDCNTNFLTFFGYENLFAYREQHLVFAEHFIRENGYYSTTHDITWLDDTLSSGRRIKMSNYEGAVSTFLLRATPL
PEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD
FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQFTGISKLTASFGVALYEQGTTR
EELMQRADIALYEAKKNGKNQVCVYRKEKM

Sequences:

>Translated_430_residues
MNILHFLLENTVFQNVLQDLQLNVLYIENGCKHQQTIENIHPKCMFIANSFEEGELLFQRTKPHIIIMYVTDYSQIKYIK
NMYTSQSTFIVIWDQQITKEFTDVLALGIRNIVIAPVTPQAVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFQNDLLFIV
EDDEIVDCNTNFLTFFGYENLFAYREQHLVFAEHFIRENGYYSTTHDITWLDDTLSSGRRIKMSNYEGAVSTFLLRATPL
PEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD
FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQFTGISKLTASFGVALYEQGTTR
EELMQRADIALYEAKKNGKNQVCVYRKEKM
>Mature_430_residues
MNILHFLLENTVFQNVLQDLQLNVLYIENGCKHQQTIENIHPKCMFIANSFEEGELLFQRTKPHIIIMYVTDYSQIKYIK
NMYTSQSTFIVIWDQQITKEFTDVLALGIRNIVIAPVTPQAVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFQNDLLFIV
EDDEIVDCNTNFLTFFGYENLFAYREQHLVFAEHFIRENGYYSTTHDITWLDDTLSSGRRIKMSNYEGAVSTFLLRATPL
PEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD
FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQFTGISKLTASFGVALYEQGTTR
EELMQRADIALYEAKKNGKNQVCVYRKEKM

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=273, Percent_Identity=29.3040293040293, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=32.4324324324324, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=31.1764705882353, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=32.5842696629214, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=30.939226519337, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=29.9465240641711, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787262, Length=208, Percent_Identity=31.7307692307692, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=32.1428571428571, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=32.9192546583851, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787056, Length=157, Percent_Identity=33.7579617834395, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=32.4022346368715, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=32.4503311258278, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=31.8471337579618, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 50393; Mature: 50393

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILHFLLENTVFQNVLQDLQLNVLYIENGCKHQQTIENIHPKCMFIANSFEEGELLFQR
CHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCEEE
TKPHIIIMYVTDYSQIKYIKNMYTSQSTFIVIWDQQITKEFTDVLALGIRNIVIAPVTPQ
CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEECCCHH
AVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFQNDLLFIVEDDEIVDCNTNFLTFFGYEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCEEEEECHHH
LFAYREQHLVFAEHFIRENGYYSTTHDITWLDDTLSSGRRIKMSNYEGAVSTFLLRATPL
HHHHHHHHHHHHHHHHHCCCCEECCCCCEEEHHHHCCCCEEEECCCCHHHHHHHEECCCC
PEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AIILFDIDNFKTVNDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVE
EEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCHH
KEAFQVAESLRFFIETKQFTGISKLTASFGVALYEQGTTREELMQRADIALYEAKKNGKN
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEECCCCCHHHHHHHHHHEEEECCCCCCC
QVCVYRKEKM
CEEEEECCCC
>Mature Secondary Structure
MNILHFLLENTVFQNVLQDLQLNVLYIENGCKHQQTIENIHPKCMFIANSFEEGELLFQR
CHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCEEE
TKPHIIIMYVTDYSQIKYIKNMYTSQSTFIVIWDQQITKEFTDVLALGIRNIVIAPVTPQ
CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEECCCHH
AVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFQNDLLFIVEDDEIVDCNTNFLTFFGYEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCEEEEECHHH
LFAYREQHLVFAEHFIRENGYYSTTHDITWLDDTLSSGRRIKMSNYEGAVSTFLLRATPL
HHHHHHHHHHHHHHHHHCCCCEECCCCCEEEHHHHCCCCEEEECCCCHHHHHHHEECCCC
PEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AIILFDIDNFKTVNDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVE
EEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCHH
KEAFQVAESLRFFIETKQFTGISKLTASFGVALYEQGTTREELMQRADIALYEAKKNGKN
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEECCCCCHHHHHHHHHHEEEECCCCCCC
QVCVYRKEKM
CEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]