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The map label for this gene is lysA [H]

Identifier: 218232998

GI number: 218232998

Start: 1412397

End: 1413713

Strand: Direct

Name: lysA [H]

Synonym: BCB4264_A1473

Alternate gene names: 218232998

Gene position: 1412397-1413713 (Clockwise)

Preceding gene: 218232891

Following gene: 218233899

Centisome position: 26.06

GC content: 40.39

Gene sequence:

>1317_bases
ATGTATTTACACGGCACAAGCCGAATTAATGGGCAAGGACACTTAGAAATTGGAGGGTGCGATACGACGCAGCTAGCAAA
GCAATACGGAACACCACTTTATGTATACGATGAAGAGTCTATTCGAGGAAAATGCCGAGCATTTCATCGTGCTTTTAAAG
AAAGTGGTTTCTCTTATCAAATAGCATATGCAAGCAAGGCGTTCTTGTGCATGGAGATGTGCCGAGTAGCTCGTGAAGAG
AGTATGTCATTAGACGTTGTTTCTGGGGGAGAATTATATACTGCGCTCCAAGCAGGATTTCCGGCATCACGTATTCATTT
TCATGGAAATAATAAAACAGAAGAAGAAATAGTGATGGCTCTTCAGGCGAATATCGGTTGTTTTGTCGTAGATAACTTCT
TTGAATTAGAAGTTTTACACGATTTAGCGATGCAACATGGGAAATTTGTGAACATATTAATTCGTGTAACGCCTGGAGTA
GAGGCGCACACACATGAATATATTACAACAGGTCAAGATGATTCGAAATTTGGATTTGGTGTTTCAAACGGTCAAGCGAT
GCAGGCAATTGGATTTGCTTTACAAAAATCAAATTATAATGTGCTAGGGATCCATTCACATATTGGGTCGCAAATATTTG
AAACAGCTGGTTTTGTTCGAGCAATTGAAGTTCTTCGCCAATTTTTAGAAGAAGTGAGAGAGCAAACAAACTATGTAGTA
AAAGTGTTAAATGTAGGCGGGGGATTTGGAATACGTTACACAGAGTCAGATACACCATTAACTCTTGAGACATATGTGCG
AGCTGTAACAAGTGCAGTGAGAGAACAATTTACTGTATGTGAATATCCATTGCCAGAAATATGGATTGAGCCAGGCCGTA
GCATTGTAGGTGATGCTGGGACAACAATTTATACAGTTGGATCTGTGAAAGATATTCCTGGTATTCGGAAATATGTATCA
GTCGATGGTGGAATGACAGATAATTTAAGACCTGCTTTATATAATGCGCGTTATGAAGCGATGTTAGCGAATCGAGCGAA
TGATGAGAATGAGGAACTCGTTTCGATTGCCGGGAAATGCTGTGAGAGTGGAGACATGTTGATTTGGGATATTCATTTAC
CGAAAGTCGCTGCTTCTGATTTACTAGCAGTTTCCTGTACAGGAGCATACGGGTACTCGATGGCGAATAATTACAATCGG
ATTCGAAGACCAGCCGTTGTCTTTGCAAAAGGCGGAACATCGCAAGTAGTTGTGGAACGCGAAACATATGAAAATATTAT
TGGGAACGATCGCATACGTATTAAAGAGCTTGTCTAA

Upstream 100 bases:

>100_bases
GTGAACATTGTTCCGCGCGTTTTTTGTCTATCTAAAAGCGTGCTGCAATGAATAGAAGATTGGGGTTATGAGTTTTAGAG
GAAATAAGGGAGGAATTTAA

Downstream 100 bases:

>100_bases
ATAGGAAAAGGAGTTGTTCGAATGGACAATTCCTTTTTTATAAAATAAAATAATTAAAATATATCGGAAAACTAGGATTG
AAAAAAATCAGAATTGTGAT

Product: diaminopimelate decarboxylase

Products: NA

Alternate protein names: DAP decarboxylase [H]

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQIAYASKAFLCMEMCRVAREE
SMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFFELEVLHDLAMQHGKFVNILIRVTPGV
EAHTHEYITTGQDDSKFGFGVSNGQAMQAIGFALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLRQFLEEVREQTNYVV
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCEYPLPEIWIEPGRSIVGDAGTTIYTVGSVKDIPGIRKYVS
VDGGMTDNLRPALYNARYEAMLANRANDENEELVSIAGKCCESGDMLIWDIHLPKVAASDLLAVSCTGAYGYSMANNYNR
IRRPAVVFAKGGTSQVVVERETYENIIGNDRIRIKELV

Sequences:

>Translated_438_residues
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQIAYASKAFLCMEMCRVAREE
SMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFFELEVLHDLAMQHGKFVNILIRVTPGV
EAHTHEYITTGQDDSKFGFGVSNGQAMQAIGFALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLRQFLEEVREQTNYVV
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCEYPLPEIWIEPGRSIVGDAGTTIYTVGSVKDIPGIRKYVS
VDGGMTDNLRPALYNARYEAMLANRANDENEELVSIAGKCCESGDMLIWDIHLPKVAASDLLAVSCTGAYGYSMANNYNR
IRRPAVVFAKGGTSQVVVERETYENIIGNDRIRIKELV
>Mature_438_residues
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQIAYASKAFLCMEMCRVAREE
SMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFFELEVLHDLAMQHGKFVNILIRVTPGV
EAHTHEYITTGQDDSKFGFGVSNGQAMQAIGFALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLRQFLEEVREQTNYVV
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCEYPLPEIWIEPGRSIVGDAGTTIYTVGSVKDIPGIRKYVS
VDGGMTDNLRPALYNARYEAMLANRANDENEELVSIAGKCCESGDMLIWDIHLPKVAASDLLAVSCTGAYGYSMANNYNR
IRRPAVVFAKGGTSQVVVERETYENIIGNDRIRIKELV

Specific function: Lysine biosynthesis; last step. [C]

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]

Homologues:

Organism=Escherichia coli, GI1789203, Length=419, Percent_Identity=30.7875894988067, Blast_Score=138, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009006
- InterPro:   IPR002986
- InterPro:   IPR022643
- InterPro:   IPR022657
- InterPro:   IPR022644
- InterPro:   IPR022653
- InterPro:   IPR000183 [H]

Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]

EC number: =4.1.1.20 [H]

Molecular weight: Translated: 48537; Mature: 48537

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ
CEECCCCEECCCEEEEECCCCHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCEEE
IAYASKAFLCMEMCRVAREESMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCEEHHHHCCCCCCEEEECCCCCCHHHHHHH
LQANIGCFVVDNFFELEVLHDLAMQHGKFVNILIRVTPGVEAHTHEYITTGQDDSKFGFG
HHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCC
VSNGQAMQAIGFALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLRQFLEEVREQTNYVV
CCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCEYPLPEIWIEPGRSIVGDAG
EEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHEECCCCCCHHEECCCCEEECCCC
TTIYTVGSVKDIPGIRKYVSVDGGMTDNLRPALYNARYEAMLANRANDENEELVSIAGKC
CEEEEECCCCCCCCCHHHEEECCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
CESGDMLIWDIHLPKVAASDLLAVSCTGAYGYSMANNYNRIRRPAVVFAKGGTSQVVVER
CCCCCEEEEEECCCCHHHCCEEEEEECCCCCCHHHCCHHHHCCCEEEEECCCCCEEEEEH
ETYENIIGNDRIRIKELV
HHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ
CEECCCCEECCCEEEEECCCCHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCEEE
IAYASKAFLCMEMCRVAREESMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCEEHHHHCCCCCCEEEECCCCCCHHHHHHH
LQANIGCFVVDNFFELEVLHDLAMQHGKFVNILIRVTPGVEAHTHEYITTGQDDSKFGFG
HHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCC
VSNGQAMQAIGFALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLRQFLEEVREQTNYVV
CCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCEYPLPEIWIEPGRSIVGDAG
EEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHEECCCCCCHHEECCCCEEECCCC
TTIYTVGSVKDIPGIRKYVSVDGGMTDNLRPALYNARYEAMLANRANDENEELVSIAGKC
CEEEEECCCCCCCCCHHHEEECCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
CESGDMLIWDIHLPKVAASDLLAVSCTGAYGYSMANNYNRIRRPAVVFAKGGTSQVVVER
CCCCCEEEEEECCCCHHHCCEEEEEECCCCCCHHHCCHHHHCCCEEEEECCCCCEEEEEH
ETYENIIGNDRIRIKELV
HHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2513554; 7934829; 1368705; 8969508; 9384377 [H]