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The map label for this gene is ydgJ [H]

Identifier: 218232958

GI number: 218232958

Start: 2921949

End: 2922377

Strand: Reverse

Name: ydgJ [H]

Synonym: BCB4264_A3045

Alternate gene names: 218232958

Gene position: 2922377-2921949 (Counterclockwise)

Preceding gene: 218233644

Following gene: 218232496

Centisome position: 53.93

GC content: 32.17

Gene sequence:

>429_bases
TTGACAAGTTCATGCTCAAAAGAAGCGATTATTTTATATAAATTACACTTTCTAAATAAAGAAGTAAGTTCGAAATTTGA
AGGGTGTACGGGTATGAGCCAGTCTCGATTAGAGCTTATACTTCAATTATTTGAAGTAGGTGAAATTAGTCAAAAAGCAC
TTCAGCAAGAAGTGAATATTGATAATGCTGCGATAACAAGGCATTTAAAGCAGCTTGAGGCCAATGAAATGATTGTAAGA
CGTAAAAATCCAGATGATAACAGAATTACGTTAGTTTCTCTTACTGAAGAGGGGCGAAATAAAATTCAGGCGTTTCAAGA
AGAAAAAGAACGTTTTGCAGCATCTGCATTTAAAGGATTAAGTGAGGAAGAACGCGATAATCTTTTAAATATGTTAAATC
ACATTCAAGAAAATATAAAAGAATTATAA

Upstream 100 bases:

>100_bases
ACAAAATGCTTGCATTCTAAATCGATATAGATTATATTAATTGACATATCAACTATTGATACATCAAATGTTTTTATTTT
GATTGTAAAGGAGGGGTAAT

Downstream 100 bases:

>100_bases
AAAAGGGAGAATACAACTATGACTAACTCAGTAAAAACAAATGATTTTAACGAAATTTTAACAGGACGTCGTTCAATTCG
TAAGTACGACCCTTCAGTGA

Product: transcriptional regulator, MarR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNIDNAAITRHLKQLEANEMIVR
RKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGLSEEERDNLLNMLNHIQENIKEL

Sequences:

>Translated_142_residues
MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNIDNAAITRHLKQLEANEMIVR
RKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGLSEEERDNLLNMLNHIQENIKEL
>Mature_141_residues
TSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNIDNAAITRHLKQLEANEMIVRR
KNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGLSEEERDNLLNMLNHIQENIKEL

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16338; Mature: 16207

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DNAAITRHLKQLEANEMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCC
SEEERDNLLNMLNHIQENIKEL
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DNAAITRHLKQLEANEMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCC
SEEERDNLLNMLNHIQENIKEL
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]