Click here to switch to the map view.

The map label for this gene is yitU [H]

Identifier: 218232834

GI number: 218232834

Start: 1186777

End: 1187586

Strand: Reverse

Name: yitU [H]

Synonym: BCB4264_A1220

Alternate gene names: 218232834

Gene position: 1187586-1186777 (Counterclockwise)

Preceding gene: 218235149

Following gene: 218234073

Centisome position: 21.92

GC content: 37.41

Gene sequence:

>810_bases
ATGAACAAACAACATTTAATCGCATTAGACTTAGACGGCACTTTATTAACAGACAACAAAATAATTTCCACTCGAACGAA
ACATACAATTGCAAAAGCAAAGGAACAGGGACATATTGTCGTTATTTCAACAGGACGTCCATTCCGTGCTAGTTATGATT
ACTATAAAGAACTTGATCTTAACACACCTATCGTAAACTTTAACGGCGCTTACGTACATCATCCTCTTGATTCAAACTGG
GGAACACATCACTCTCCTCTTGAGCTAGCAACAGCGCAAGAAATTGTCCGAGCTTGCTTTGATTTTGGCGTAAAAAATAT
ATACGCGGAAGTAATGGACGATGTGTATGTTCGTGAAATTGATGAAGATAAAAAACATATTTTCGAATTCGGCTCTCCTA
AGATTTTTACGGGAGACTTATTAAATATTTTAAACGATCATCCAACTTGCTTATTAATTGACGCCCATGACGAGCATTCT
ACTGCAATTCGTCAACATTTAACCGATATGCATGCGGAAGTAATCGACCATAGAAAATGGGGCGCACCTTGGCCGATTAT
TGAAATTGTGAAAAGCGGATTAAATAAAGCAGTTGGATTACAAAAAATTTCTAGTCATTACAACATTCCACAAGAGCGAA
TTATCGCTTTCGGTGATGAAGATAATGATTTTGAAATGATTGAATTTGCTGGTCACGGCATCGCAATGGGTAATGCCATC
CCTGAATTAAAATCACTCGCAAACCATACGACGTTAACGAACGAAGAAGATGGTATTGCTTTATATTTAGAAGAGGTTCT
TGGGTTGTAA

Upstream 100 bases:

>100_bases
TTTCATCTATGGTGATTCCACCGAGTCTAACCTCTTATTTCTGCATATTAAAAACGGAAATACAGATAGATACAAAAAAA
TTATTATAAGAGGTGAAATT

Downstream 100 bases:

>100_bases
TCTAAAAATTTCCTACTTATAGTTTCCTGCCAAATGTCCATACTATAAGTAGACGCATGAGACATTGCGTCGATTGTTTT
CAGCTAAATAAAGGGGGTTT

Product: hydrolase, haloacid dehalogenase-like family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNKQHLIALDLDGTLLTDNKIISTRTKHTIAKAKEQGHIVVISTGRPFRASYDYYKELDLNTPIVNFNGAYVHHPLDSNW
GTHHSPLELATAQEIVRACFDFGVKNIYAEVMDDVYVREIDEDKKHIFEFGSPKIFTGDLLNILNDHPTCLLIDAHDEHS
TAIRQHLTDMHAEVIDHRKWGAPWPIIEIVKSGLNKAVGLQKISSHYNIPQERIIAFGDEDNDFEMIEFAGHGIAMGNAI
PELKSLANHTTLTNEEDGIALYLEEVLGL

Sequences:

>Translated_269_residues
MNKQHLIALDLDGTLLTDNKIISTRTKHTIAKAKEQGHIVVISTGRPFRASYDYYKELDLNTPIVNFNGAYVHHPLDSNW
GTHHSPLELATAQEIVRACFDFGVKNIYAEVMDDVYVREIDEDKKHIFEFGSPKIFTGDLLNILNDHPTCLLIDAHDEHS
TAIRQHLTDMHAEVIDHRKWGAPWPIIEIVKSGLNKAVGLQKISSHYNIPQERIIAFGDEDNDFEMIEFAGHGIAMGNAI
PELKSLANHTTLTNEEDGIALYLEEVLGL
>Mature_269_residues
MNKQHLIALDLDGTLLTDNKIISTRTKHTIAKAKEQGHIVVISTGRPFRASYDYYKELDLNTPIVNFNGAYVHHPLDSNW
GTHHSPLELATAQEIVRACFDFGVKNIYAEVMDDVYVREIDEDKKHIFEFGSPKIFTGDLLNILNDHPTCLLIDAHDEHS
TAIRQHLTDMHAEVIDHRKWGAPWPIIEIVKSGLNKAVGLQKISSHYNIPQERIIAFGDEDNDFEMIEFAGHGIAMGNAI
PELKSLANHTTLTNEEDGIALYLEEVLGL

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=284, Percent_Identity=29.9295774647887, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI48994981, Length=284, Percent_Identity=26.056338028169, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 30311; Mature: 30311

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01228 COF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQHLIALDLDGTLLTDNKIISTRTKHTIAKAKEQGHIVVISTGRPFRASYDYYKELDL
CCCCEEEEEECCCEEEECCCEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCC
NTPIVNFNGAYVHHPLDSNWGTHHSPLELATAQEIVRACFDFGVKNIYAEVMDDVYVREI
CCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DEDKKHIFEFGSPKIFTGDLLNILNDHPTCLLIDAHDEHSTAIRQHLTDMHAEVIDHRKW
CHHHHHHHHCCCCCEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GAPWPIIEIVKSGLNKAVGLQKISSHYNIPQERIIAFGDEDNDFEMIEFAGHGIAMGNAI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEECCCCEECCCCC
PELKSLANHTTLTNEEDGIALYLEEVLGL
HHHHHHHHCCCCCCCCCCCEEEHHHHHCC
>Mature Secondary Structure
MNKQHLIALDLDGTLLTDNKIISTRTKHTIAKAKEQGHIVVISTGRPFRASYDYYKELDL
CCCCEEEEEECCCEEEECCCEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCC
NTPIVNFNGAYVHHPLDSNWGTHHSPLELATAQEIVRACFDFGVKNIYAEVMDDVYVREI
CCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DEDKKHIFEFGSPKIFTGDLLNILNDHPTCLLIDAHDEHSTAIRQHLTDMHAEVIDHRKW
CHHHHHHHHCCCCCEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GAPWPIIEIVKSGLNKAVGLQKISSHYNIPQERIIAFGDEDNDFEMIEFAGHGIAMGNAI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEECCCCEECCCCC
PELKSLANHTTLTNEEDGIALYLEEVLGL
HHHHHHHHCCCCCCCCCCCEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9025291; 9384377 [H]