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The map label for this gene is rbcR [H]

Identifier: 218232794

GI number: 218232794

Start: 1661200

End: 1662093

Strand: Reverse

Name: rbcR [H]

Synonym: BCB4264_A1751

Alternate gene names: 218232794

Gene position: 1662093-1661200 (Counterclockwise)

Preceding gene: 218233712

Following gene: 218234393

Centisome position: 30.67

GC content: 33.78

Gene sequence:

>894_bases
ATGAATCTCTTAAAATTAGAAATTGTAGTACTTATTAAGAAATACAAAAAGCTTACAATCGTTGCAGAAAAACTTGGCGT
TAAACAACCAACTATTACATTTCATATAAAAAGCTTAGAAGAAGAACTCGGTGTGTCTTTATTCGAATTACGTTCTGGAA
GGTATTTCTTAACAGAGGCTGGTGAGGCTTTGCACCATTATGCTTGTAAAATAGATGCGCTTATGAAAGAAGCTAGACGT
GTCACGCAAGAGTTTAAAGATTTTCATAAAGGTGCTATAACAATCGGCGCTAGCTATGTACCAGCGACTTATCTTTTGCC
AGAAGTCGTTCATCAATTTCAATGCGAATTTCCCAATATAAAAATAACGCTACTAGTGAAAACAGCCCCTGAAATTCGAA
TGATGCTACAAAATCACGAAATCGATCTTGGGATAATTTCCGCTGCTCCATTTGATGAACCTCTTTTAAAACAAACGAAT
ATAATGCCCGATACACTTGTTCTTGCCTTTTCCAAAGAACATCATTTTTCAAAGAAAGACAATGTATCGTTACAAAATAT
CGAAAAGGAACGCATACTATTGCATCGTAATCCATCTACAACGAGAGATTTACTTACACAATGGACGTTGGCGCACAACA
TTACATTCCAATCTGAAATTGAATTAGACTCATTAGAAACGATGAAACAAATTTTAAAATATGGTAATGGAATTGCCTTT
ATTTCTAAACTTGCTATCGAGCAAGAAATACAACGAAATGAGCTATGCTATATACCAATCCCTGAATTTGAATTTCAGCG
TAATATTTATACGATTCATCATGAGGACAGATGGAATTCTAAAATCATTTCTTTTTTACTACAGAGCATCACTTCATTTA
CAACAAAAAATTAA

Upstream 100 bases:

>100_bases
ATGTTAATGTACTGTAAAGATTAAATTAAAAAACTTCTAATAAACTATTTATTTCTATAGATTTTTTCTATAGTTAAAAT
AAAAAAGGCGGCAATTCATA

Downstream 100 bases:

>100_bases
AAGGCTGTCGTTATGCACGACAGCCTTTTAAACTATAAATCTATTTATTTTTCTTTGCCTCAATTTTTGCTTGCGCCTCT
TCAGCCTTATCTAATGCTTC

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEVVHQFQCEFPNIKITLLVKTAPEIRMMLQNHEIDLGIISAAPFDEPLLKQTN
IMPDTLVLAFSKEHHFSKKDNVSLQNIEKERILLHRNPSTTRDLLTQWTLAHNITFQSEIELDSLETMKQILKYGNGIAF
ISKLAIEQEIQRNELCYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSFTTKN

Sequences:

>Translated_297_residues
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEVVHQFQCEFPNIKITLLVKTAPEIRMMLQNHEIDLGIISAAPFDEPLLKQTN
IMPDTLVLAFSKEHHFSKKDNVSLQNIEKERILLHRNPSTTRDLLTQWTLAHNITFQSEIELDSLETMKQILKYGNGIAF
ISKLAIEQEIQRNELCYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSFTTKN
>Mature_297_residues
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEVVHQFQCEFPNIKITLLVKTAPEIRMMLQNHEIDLGIISAAPFDEPLLKQTN
IMPDTLVLAFSKEHHFSKKDNVSLQNIEKERILLHRNPSTTRDLLTQWTLAHNITFQSEIELDSLETMKQILKYGNGIAF
ISKLAIEQEIQRNELCYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSFTTKN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=26.5957446808511, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=23.4432234432234, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=26.457399103139, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=29.4354838709677, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082132, Length=270, Percent_Identity=23.7037037037037, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI145693105, Length=278, Percent_Identity=24.4604316546763, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=248, Percent_Identity=22.1774193548387, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=255, Percent_Identity=24.3137254901961, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI2367136, Length=234, Percent_Identity=24.7863247863248, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34394; Mature: 34394

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEA
CCCHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEEEEEHHHHHHCCEEEECCCCCEEEEHH
GEALHHYACKIDALMKEARRVTQEFKDFHKGAITIGASYVPATYLLPEVVHQFQCEFPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE
KITLLVKTAPEIRMMLQNHEIDLGIISAAPFDEPLLKQTNIMPDTLVLAFSKEHHFSKKD
EEEEEEECCHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCC
NVSLQNIEKERILLHRNPSTTRDLLTQWTLAHNITFQSEIELDSLETMKQILKYGNGIAF
CCCHHCCCHHEEEEECCCCHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHCCCHHH
ISKLAIEQEIQRNELCYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSFTTKN
HHHHHHHHHHHHCCEEEEECCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEA
CCCHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEEEEEHHHHHHCCEEEECCCCCEEEEHH
GEALHHYACKIDALMKEARRVTQEFKDFHKGAITIGASYVPATYLLPEVVHQFQCEFPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE
KITLLVKTAPEIRMMLQNHEIDLGIISAAPFDEPLLKQTNIMPDTLVLAFSKEHHFSKKD
EEEEEEECCHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCC
NVSLQNIEKERILLHRNPSTTRDLLTQWTLAHNITFQSEIELDSLETMKQILKYGNGIAF
CCCHHCCCHHEEEEECCCCHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHCCCHHH
ISKLAIEQEIQRNELCYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSFTTKN
HHHHHHHHHHHHCCEEEEECCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA