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The map label for this gene is hfq1 [H]

Identifier: 218232776

GI number: 218232776

Start: 1611573

End: 1611761

Strand: Direct

Name: hfq1 [H]

Synonym: BCB4264_A1691

Alternate gene names: 218232776

Gene position: 1611573-1611761 (Clockwise)

Preceding gene: 218231874

Following gene: 218231406

Centisome position: 29.74

GC content: 27.51

Gene sequence:

>189_bases
TTGGAACATTTACAGGAAGAATTGTATAAACAAATAAAAGAAGAAAAAGGTACAGTTACAATTTTCTTAAAGAGTGGTGT
TAGAATAATAGGAGAAGTTGTTGGAGTAGATAAATTTACAGTTTTAATCTTAGTGGATGGAAAACAACAGCTTATTTATA
AGCAGGCTATATCAACAATAATGAAATAA

Upstream 100 bases:

>100_bases
ATACTAATTAATAAGTTTATGAATGTAAAAGACAAAGTGCATAAATAAAAAATTTATAGTTTTTTATATTAAGATGTTTC
ACGGAAAGGGGGGACAGTAA

Downstream 100 bases:

>100_bases
GACACTCTTGTTGAGTGTCTTATTTCATTATTGCTTGCATGCCTCAACATCAATGCCGGCAGCAATTAACTTCTTTTCTC
CATCTTGTTCAATAATTTTT

Product: host factor-I protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MEHLQEELYKQIKEEKGTVTIFLKSGVRIIGEVVGVDKFTVLILVDGKQQLIYKQAISTIMK

Sequences:

>Translated_62_residues
MEHLQEELYKQIKEEKGTVTIFLKSGVRIIGEVVGVDKFTVLILVDGKQQLIYKQAISTIMK
>Mature_62_residues
MEHLQEELYKQIKEEKGTVTIFLKSGVRIIGEVVGVDKFTVLILVDGKQQLIYKQAISTIMK

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 7079; Mature: 7079

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHLQEELYKQIKEEKGTVTIFLKSGVRIIGEVVGVDKFTVLILVDGKQQLIYKQAISTI
CCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
MK
CC
>Mature Secondary Structure
MEHLQEELYKQIKEEKGTVTIFLKSGVRIIGEVVGVDKFTVLILVDGKQQLIYKQAISTI
CCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
MK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA