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The map label for this gene is rocB [H]

Identifier: 218232641

GI number: 218232641

Start: 2868900

End: 2870540

Strand: Reverse

Name: rocB [H]

Synonym: BCB4264_A2996

Alternate gene names: 218232641

Gene position: 2870540-2868900 (Counterclockwise)

Preceding gene: 218233947

Following gene: 218231374

Centisome position: 52.97

GC content: 34.92

Gene sequence:

>1641_bases
ATGTCAAAGTGGCAATCAAAAGAACAATTGGTTCAATTATTAAGCAGTCTTGTTGAAATTCCTAGTATTACCGGTTCAGA
AGCTGAAGTAATATTGCCAGACTTTGTTGTGGAACAATTATCTGACTTACAGTATTTCAAACAAAAACCGCACCATTTGC
AAAAAAATCCGACAGGGGACGGACGATATTTTGTTACAGCACTAGTAAAGAAAAGCGATAGTACAAAAAATACTGTAATT
CTAGTAAGTCACTTTGATGTTGTAGATGTACAAGATTACGGAATGTGGAAAGAAGATGCATTTAATCCTAAAAAGTTAAC
ATCTATGTTTTATTCTCATAAAGATGAACTTCCAGACCATGTACGTGAAGATATAGAACATGGAGAATGGCTGTTTGGTA
GAGGAACAATGGATATGAAATGCGGCCTCGCATTACAAATGGCAATGATTGAGCAAGCTTGCGAAGAAAGATTTGATGGG
AATGTTCTTTTATTGGCTGTACCAGATGAAGAAGTAAATTCTGTAGGGATGAGGGCCGCTGTTCCGAGACTGTTAGATTT
AGCAAGAGAGCATAACTTAGATTATAAAACGGTCTTAAACTCAGAGCCTATGTTTTCCAGACATCCTGGTGACCAAAATA
AGTATATTTACACTGGCTCTATTGGTAAAGTGTTACCTGGTTTTCTTTGCTACGGAAAAGAGACACATGTAGGTGAACCT
TTTGCAGGGTTAAATGGGAGTTATATGGCTTCATTAATAACAGCAGAATTAGAGTTAAACACAGACCTTTGTGATATTGT
AGAAGGGGAAGCGAGTCCTCCGCCAACTAACTTACTTCAAAGGGACTTAAAAGAGGATTATTCTGTACAAATTCCGCATC
GTGCAGTTACATTATTTAATTTGTTTTTATTAGAAAAATCAATGACAGATGTAGTTTCATTGTTACGTCAAAAAGTAACG
AAAGTAGCAGAGAAAATAGAAGAGTCGTATGAAAAACATGCATATCGTTTTTCTAAATATAATCCATTTATACCACCTAA
TCTCAAAGTAAATGTATTAACTTATGAAGAGCTTATCACATATGCAATTGAGCAACATGGACGAGAAAAAATAAATCATA
TTCAATCTAATATTATAAAAAATAGAGGAGATAAAGATGATCGTGCGGTAACCATTGATTTAGTAGATAAATTAGCGATC
TTATGTAAAGAAAAGGCACCGATGATTGTACTTTTCTTCGCTCCGCCGTACTATCCAGCTGTGAGTTCACGCAACAATCC
TTTAATAAAAGAGGTAGTTGTAGAAATGGAAAAGTATGCACACTACAATCATAAAATTACATTTGAAAACCAAAATTATT
TTGGGGGGATTTCAGATTTAAGTTATGTAGGCTTGCAGTATCCACTGGATTCAATGAGTTCGCTTGTAGACAATATGCCA
TTATGGGATAAAGGTTATTCAATTCCGCTTCAGGAATTAGAAGAGTTTGATGTTCCAGTATTAAATATGGGGCCGGTAGG
AAAAGATGCACATCAATGGACAGAACGTCTAGATGTAAACTACGCATTTGAAACGCTATTAGATATGTTACCGAAATGCA
TTGAAAAATTATTAGTTTCTAATAAAATTACACAATCATAG

Upstream 100 bases:

>100_bases
AAATCGGCAGTACATCAGAACTATAATTTTGATAGCTGTCGTCATTTTTTATTCATATAATGGAATTAGTTTTCATAATT
CGGAAAATAGGGGGATTTAT

Downstream 100 bases:

>100_bases
TAGGGAATAGGTAAGGGATAAAACAGAACCTGTAAAGAAGATTTGAATGAAATTATTTTAATATAATTAAAACTGAAACG
GCCAAACTCAAGTATATATG

Product: RocB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MSKWQSKEQLVQLLSSLVEIPSITGSEAEVILPDFVVEQLSDLQYFKQKPHHLQKNPTGDGRYFVTALVKKSDSTKNTVI
LVSHFDVVDVQDYGMWKEDAFNPKKLTSMFYSHKDELPDHVREDIEHGEWLFGRGTMDMKCGLALQMAMIEQACEERFDG
NVLLLAVPDEEVNSVGMRAAVPRLLDLAREHNLDYKTVLNSEPMFSRHPGDQNKYIYTGSIGKVLPGFLCYGKETHVGEP
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVT
KVAEKIEESYEKHAYRFSKYNPFIPPNLKVNVLTYEELITYAIEQHGREKINHIQSNIIKNRGDKDDRAVTIDLVDKLAI
LCKEKAPMIVLFFAPPYYPAVSSRNNPLIKEVVVEMEKYAHYNHKITFENQNYFGGISDLSYVGLQYPLDSMSSLVDNMP
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPKCIEKLLVSNKITQS

Sequences:

>Translated_546_residues
MSKWQSKEQLVQLLSSLVEIPSITGSEAEVILPDFVVEQLSDLQYFKQKPHHLQKNPTGDGRYFVTALVKKSDSTKNTVI
LVSHFDVVDVQDYGMWKEDAFNPKKLTSMFYSHKDELPDHVREDIEHGEWLFGRGTMDMKCGLALQMAMIEQACEERFDG
NVLLLAVPDEEVNSVGMRAAVPRLLDLAREHNLDYKTVLNSEPMFSRHPGDQNKYIYTGSIGKVLPGFLCYGKETHVGEP
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVT
KVAEKIEESYEKHAYRFSKYNPFIPPNLKVNVLTYEELITYAIEQHGREKINHIQSNIIKNRGDKDDRAVTIDLVDKLAI
LCKEKAPMIVLFFAPPYYPAVSSRNNPLIKEVVVEMEKYAHYNHKITFENQNYFGGISDLSYVGLQYPLDSMSSLVDNMP
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPKCIEKLLVSNKITQS
>Mature_545_residues
SKWQSKEQLVQLLSSLVEIPSITGSEAEVILPDFVVEQLSDLQYFKQKPHHLQKNPTGDGRYFVTALVKKSDSTKNTVIL
VSHFDVVDVQDYGMWKEDAFNPKKLTSMFYSHKDELPDHVREDIEHGEWLFGRGTMDMKCGLALQMAMIEQACEERFDGN
VLLLAVPDEEVNSVGMRAAVPRLLDLAREHNLDYKTVLNSEPMFSRHPGDQNKYIYTGSIGKVLPGFLCYGKETHVGEPF
AGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVTK
VAEKIEESYEKHAYRFSKYNPFIPPNLKVNVLTYEELITYAIEQHGREKINHIQSNIIKNRGDKDDRAVTIDLVDKLAIL
CKEKAPMIVLFFAPPYYPAVSSRNNPLIKEVVVEMEKYAHYNHKITFENQNYFGGISDLSYVGLQYPLDSMSSLVDNMPL
WDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPKCIEKLLVSNKITQS

Specific function: Unknown

COG id: COG4187

COG function: function code E; Arginine degradation protein (predicted deacylase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis rocB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002933
- InterPro:   IPR012166 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 62243; Mature: 62112

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKWQSKEQLVQLLSSLVEIPSITGSEAEVILPDFVVEQLSDLQYFKQKPHHLQKNPTGD
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GRYFVTALVKKSDSTKNTVILVSHFDVVDVQDYGMWKEDAFNPKKLTSMFYSHKDELPDH
CCEEEEEEECCCCCCCCEEEEEEECCEEECHHCCCCHHCCCCHHHHHHHHHHHHHCCHHH
VREDIEHGEWLFGRGTMDMKCGLALQMAMIEQACEERFDGNVLLLAVPDEEVNSVGMRAA
HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
VPRLLDLAREHNLDYKTVLNSEPMFSRHPGDQNKYIYTGSIGKVLPGFLCYGKETHVGEP
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFN
CCCCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHH
LFLLEKSMTDVVSLLRQKVTKVAEKIEESYEKHAYRFSKYNPFIPPNLKVNVLTYEELIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHH
YAIEQHGREKINHIQSNIIKNRGDKDDRAVTIDLVDKLAILCKEKAPMIVLFFAPPYYPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VSSRNNPLIKEVVVEMEKYAHYNHKITFENQNYFGGISDLSYVGLQYPLDSMSSLVDNMP
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPKCIEKLLVS
CCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
NKITQS
CCCCCC
>Mature Secondary Structure 
SKWQSKEQLVQLLSSLVEIPSITGSEAEVILPDFVVEQLSDLQYFKQKPHHLQKNPTGD
CCCCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GRYFVTALVKKSDSTKNTVILVSHFDVVDVQDYGMWKEDAFNPKKLTSMFYSHKDELPDH
CCEEEEEEECCCCCCCCEEEEEEECCEEECHHCCCCHHCCCCHHHHHHHHHHHHHCCHHH
VREDIEHGEWLFGRGTMDMKCGLALQMAMIEQACEERFDGNVLLLAVPDEEVNSVGMRAA
HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
VPRLLDLAREHNLDYKTVLNSEPMFSRHPGDQNKYIYTGSIGKVLPGFLCYGKETHVGEP
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFN
CCCCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHH
LFLLEKSMTDVVSLLRQKVTKVAEKIEESYEKHAYRFSKYNPFIPPNLKVNVLTYEELIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHH
YAIEQHGREKINHIQSNIIKNRGDKDDRAVTIDLVDKLAILCKEKAPMIVLFFAPPYYPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VSSRNNPLIKEVVVEMEKYAHYNHKITFENQNYFGGISDLSYVGLQYPLDSMSSLVDNMP
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPKCIEKLLVS
CCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
NKITQS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]