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The map label for this gene is nrdD [H]

Identifier: 218232610

GI number: 218232610

Start: 3631901

End: 3633760

Strand: Reverse

Name: nrdD [H]

Synonym: BCB4264_A3711

Alternate gene names: 218232610

Gene position: 3633760-3631901 (Counterclockwise)

Preceding gene: 218235522

Following gene: 218233236

Centisome position: 67.06

GC content: 36.56

Gene sequence:

>1860_bases
ATGTTACAAAATAATACACGTGGAGAAGAAGAATTAATGAAAGTGTTTGAGACAATAGTCCACGGCAATGAACAAGATTT
GATGCAAGAAAATGCAAATGTAGACGGCCGCTCTCCAATGGGCGTAATGGGAACGTTCGCATCTGAGAGTGCAAAATATT
ATGCTGTTGAGAATTTATTGTCAGATCAAGTGAAAAAAGCGATAAATGAAAATATATTATATCCACATGATTTAGATTTT
TATGCAACAGGAACGACGACTTGTTCACAAATTCCGTTAGCGCAAATGCTTGCTAATGGTTTTCATACTGGACATGGACA
TATGAGACAACCGCAAGACATTAAAAGTGCATTGGCTCTTTCGTCTATTATTTTTCAAGCGAATCAAAATATGCAGCACG
GTGGTCAATCGTTTGCACTCTTTGATATTGATTTAGCACCTTATGTACGAAAAACAATTGAGAGACATAAAAAACGATTA
CAATCATATCCGCTTACGAAAGAACAAATAGAAGAATTTGCATGGAAAGAAACGGAAAATGATACGTATCAAGCGTGTGA
GGCTTTCGTTCATAATTCGAATAGTATGCATAGTAGAGGCGGAGGACAAGTACCGTTTATTTCTATTAATTATGGAACAG
ATACATCAAAAGAAGGAAGAATGTTAATTAAACAACTTTTAAAAGCGACACAAGCTGGACTTGGTAAAGGAGAGACACCG
ATTTTTCCGATTCAAATTTTCAAGATGAAAAAAGGTGTGAATTTTGAAGAAAGTGATCCGAACTACGATTTATTTGAATT
AGCATTAGAGACAACCGCAGAGCGATTATTCCCTAACTTTTCATTTTTAGATGCTCCGTTTAATGCAGTGCATTATGATG
GAAGACCAGAAAGTGAAGTATGTTACATGGGATGTCGTACCCGTGTTATGTCTAATATACATGGAGAAGAAACAGCGATT
GGTAGAGGGAATTTATCATTTACGTCTATTAATTTAGTGAAATTAGCGTTAATTAGTGGTTCAAAAGAAGCGTTTTTTGA
AGCGCTAAACTATTATTTAGATTTAGGAATTAAGCAGCTATTAGAAAGATATGCGTATCAATGTACGAAGCGAGCAAGAG
ATTTTCAGTTTTTATATTCACAAGGTGTATGGCGTGGTGGAGAAACGTTGCAGCCTGAAGACTCCGTAGCCTCGATTTTA
AAACAAGGGACGTTAAGTATTGGTTTTATCGGTCTTGCGGAATGTTTAGTAGCTTTAACAGGAAAGCATCATGGGGAAGA
TGAAGAATCATGGAAACTTGGGTATGAAATTATTTCCTTTATGAGAGATAGAATGGATAAAGCGACAGAAGAACATCAAC
TGAATTTCTCAGTAATTGCAACTCCAGCAGAAGGATTATCAGGGAAGTTTGTGAAAAAAGATAGAGAAGAATTTGGCATG
ATTAGCGGTATAACGAACCATAATTACTATACGAATTCATTCCATATTCCAGTTTATTATAACATTCAAGCGATAAATAA
AATCCATTTAGAAGGCCCGTTCCATGCTCTCTGTAATGGAGGACATATTACTTATATTGAACTAGACGGAGCAGCAATGC
ATAACAAAAAGGCATTAAAACAAATTGTACAAGCCATGGCAGAACATGGCGTTGGATACGGTTCAATTAATCATCCTGTT
GACCGTTGTAAGTGCTGTAGTTATCACGGGGTTATTGGGAATGAATGTCCAAGTTGCGGGAATGAAGATGAGGCTAATAT
AGAAAGAATTCGCCGTATAACAGGCTATCTTGTAGGAGATATGTCGAAGTGGAATAGTGCGAAACGTAGTGAAGAGATAG
ATCGGGTGAAACATAAATGA

Upstream 100 bases:

>100_bases
AAAAATTTCACAGTAATGTTACATTTCTCACAGAAACAGTAAGACTATATGTAGTAACATTTTAATCAAAAGACAACAAC
ATATTGGTGGAGGGTTATAA

Downstream 100 bases:

>100_bases
AAGTGATGAATATTATTCATGATAGTGTAGTAGATGGAGAAGGGTTGCGGACAGTCGTGTTTTTTGCGGGCTGTCCGCAT
CGTTGCGTTGGTTGCCACAA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MLQNNTRGEEELMKVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLSDQVKKAINENILYPHDLDF
YATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDIDLAPYVRKTIERHKKRL
QSYPLTKEQIEEFAWKETENDTYQACEAFVHNSNSMHSRGGGQVPFISINYGTDTSKEGRMLIKQLLKATQAGLGKGETP
IFPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVCYMGCRTRVMSNIHGEETAI
GRGNLSFTSINLVKLALISGSKEAFFEALNYYLDLGIKQLLERYAYQCTKRARDFQFLYSQGVWRGGETLQPEDSVASIL
KQGTLSIGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKATEEHQLNFSVIATPAEGLSGKFVKKDREEFGM
ISGITNHNYYTNSFHIPVYYNIQAINKIHLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYGSINHPV
DRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDMSKWNSAKRSEEIDRVKHK

Sequences:

>Translated_619_residues
MLQNNTRGEEELMKVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLSDQVKKAINENILYPHDLDF
YATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDIDLAPYVRKTIERHKKRL
QSYPLTKEQIEEFAWKETENDTYQACEAFVHNSNSMHSRGGGQVPFISINYGTDTSKEGRMLIKQLLKATQAGLGKGETP
IFPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVCYMGCRTRVMSNIHGEETAI
GRGNLSFTSINLVKLALISGSKEAFFEALNYYLDLGIKQLLERYAYQCTKRARDFQFLYSQGVWRGGETLQPEDSVASIL
KQGTLSIGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKATEEHQLNFSVIATPAEGLSGKFVKKDREEFGM
ISGITNHNYYTNSFHIPVYYNIQAINKIHLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYGSINHPV
DRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDMSKWNSAKRSEEIDRVKHK
>Mature_619_residues
MLQNNTRGEEELMKVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLSDQVKKAINENILYPHDLDF
YATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDIDLAPYVRKTIERHKKRL
QSYPLTKEQIEEFAWKETENDTYQACEAFVHNSNSMHSRGGGQVPFISINYGTDTSKEGRMLIKQLLKATQAGLGKGETP
IFPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVCYMGCRTRVMSNIHGEETAI
GRGNLSFTSINLVKLALISGSKEAFFEALNYYLDLGIKQLLERYAYQCTKRARDFQFLYSQGVWRGGETLQPEDSVASIL
KQGTLSIGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKATEEHQLNFSVIATPAEGLSGKFVKKDREEFGM
ISGITNHNYYTNSFHIPVYYNIQAINKIHLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYGSINHPV
DRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDMSKWNSAKRSEEIDRVKHK

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=614, Percent_Identity=33.3876221498371, Blast_Score=312, Evalue=4e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 69645; Mature: 69645

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNNTRGEEELMKVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLL
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHH
SDQVKKAINENILYPHDLDFYATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALAL
HHHHHHHHHCCCCCCCCCCEEECCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
SSIIFQANQNMQHGGQSFALFDIDLAPYVRKTIERHKKRLQSYPLTKEQIEEFAWKETEN
HHHHHHHCCCHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
DTYQACEAFVHNSNSMHSRGGGQVPFISINYGTDTSKEGRMLIKQLLKATQAGLGKGETP
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
IFPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEV
EEEHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCCHH
CYMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLALISGSKEAFFEALNYYLDLGIKQL
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHEEEEEECCCCHHHHHHHHHHHHHHHHHHH
LERYAYQCTKRARDFQFLYSQGVWRGGETLQPEDSVASILKQGTLSIGFIGLAECLVALT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHH
GKHHGEDEESWKLGYEIISFMRDRMDKATEEHQLNFSVIATPAEGLSGKFVKKDREEFGM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCC
ISGITNHNYYTNSFHIPVYYNIQAINKIHLEGPFHALCNGGHITYIELDGAAMHNKKALK
CCCCCCCCEEECEEEEEEEEEEEEEEEEEECCCHHHHCCCCEEEEEEECCCHHHHHHHHH
QIVQAMAEHGVGYGSINHPVDRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGD
HHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
MSKWNSAKRSEEIDRVKHK
HHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLQNNTRGEEELMKVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLL
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHH
SDQVKKAINENILYPHDLDFYATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALAL
HHHHHHHHHCCCCCCCCCCEEECCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
SSIIFQANQNMQHGGQSFALFDIDLAPYVRKTIERHKKRLQSYPLTKEQIEEFAWKETEN
HHHHHHHCCCHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
DTYQACEAFVHNSNSMHSRGGGQVPFISINYGTDTSKEGRMLIKQLLKATQAGLGKGETP
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
IFPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEV
EEEHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCCHH
CYMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLALISGSKEAFFEALNYYLDLGIKQL
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHEEEEEECCCCHHHHHHHHHHHHHHHHHHH
LERYAYQCTKRARDFQFLYSQGVWRGGETLQPEDSVASILKQGTLSIGFIGLAECLVALT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHH
GKHHGEDEESWKLGYEIISFMRDRMDKATEEHQLNFSVIATPAEGLSGKFVKKDREEFGM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCC
ISGITNHNYYTNSFHIPVYYNIQAINKIHLEGPFHALCNGGHITYIELDGAAMHNKKALK
CCCCCCCCEEECEEEEEEEEEEEEEEEEEECCCHHHHCCCCEEEEEEECCCHHHHHHHHH
QIVQAMAEHGVGYGSINHPVDRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGD
HHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
MSKWNSAKRSEEIDRVKHK
HHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]