BacMap

Definition	Bacillus cereus B4264, complete genome.
Accession	NC_011725
Length	5,419,036

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The map label for this gene is yjdA [H]

Identifier: 218232514

GI number: 218232514

Start: 170898

End: 171674

Strand: Direct

Name: yjdA [H]

Synonym: BCB4264_A0196

Alternate gene names: 218232514

Gene position: 170898-171674 (Clockwise)

Preceding gene: 218231279

Following gene: 218231297

Centisome position: 3.15

GC content: 36.81

Gene sequence:

>777_bases
ATGATGAACCAATTGAAAAATAAAGTAGCAGTTATTACAGGGGTAAGTCGTCTAGATGGTATAGGCGCAGCGGTTTGTAA
AGAATTAGCTGAATTAGGATACGATATATTTTTTACGTATTGGACAGCTTACGATAAAGAGAGGCCTTGGGGCGTTGATA
AAAATGAACAAATACAATTAAAAGAAGAGTTACTAAAAAACGGTGTTAAAGTCTCAAGTATGGAGTTAGATTTAACTCAG
AATGATGCACCGAAAGAGCTTATAAATAAAGTTACTGAACAATTAGGGTACCCTTATATATTAATTAATAATGCAGCATA
TTCTACGAATAATGATTTCTCTACGTTGACTGCTGAAGAATTAGATAAGCATTATATGGTAAATGTTCGTGCGACTACAT
TGCTCAGTAGTCAATTTTCCCGGGGATTTGATAAGAAATATGGTGGTAGAATTGTTAATATTACTTCGGGGCAATTTCAA
GGTCCTATGGCAGGAGAACTAGCTTATGCGACAACGAAGGGAGCTATTGATGCTCTTACTAGTACGTTGTCAGCAGAGGT
AGCTCATTTAGGAATAACAGTGAATGCAATTAATCCAGGACCAACCGATACAGGATGGATGACTGAAGAGATAAAACAAG
GGTTAAAGCCGATGTTTCCTTTTGGCAGAATTGGTGAGCCAAGGGATGCAGCTAGACTCATTAAATTTCTAGTAAGTGAA
GAAGCTGAGTGGATTACTGGGCAAGTTATTCATTCAGAAGGTGGATTTAAAAGATAA

Upstream 100 bases:

>100_bases
CTTTTATAAGGATAGGTGCCTATTTTATGTATCTGTCTTTTTTGTGGGAAAGTTTATATCTCTTATATAAAATATGCGTC
CTTTAAACTTGGAGGAGTAT

Downstream 100 bases:

>100_bases
AAAAGAAGGTATCTCACCTTGGTGAGATACCTTCTTTTTTAATCTTTCTTCAATCTTCGTGCAACATCATTCCCTAAAGA
CTGTAATCCTTGAACGAGGA

Product: 3-ketoacyl-(acyl-carrier-protein) reductase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MMNQLKNKVAVITGVSRLDGIGAAVCKELAELGYDIFFTYWTAYDKERPWGVDKNEQIQLKEELLKNGVKVSSMELDLTQ
NDAPKELINKVTEQLGYPYILINNAAYSTNNDFSTLTAEELDKHYMVNVRATTLLSSQFSRGFDKKYGGRIVNITSGQFQ
GPMAGELAYATTKGAIDALTSTLSAEVAHLGITVNAINPGPTDTGWMTEEIKQGLKPMFPFGRIGEPRDAARLIKFLVSE
EAEWITGQVIHSEGGFKR

Sequences:

>Translated_258_residues
MMNQLKNKVAVITGVSRLDGIGAAVCKELAELGYDIFFTYWTAYDKERPWGVDKNEQIQLKEELLKNGVKVSSMELDLTQ
NDAPKELINKVTEQLGYPYILINNAAYSTNNDFSTLTAEELDKHYMVNVRATTLLSSQFSRGFDKKYGGRIVNITSGQFQ
GPMAGELAYATTKGAIDALTSTLSAEVAHLGITVNAINPGPTDTGWMTEEIKQGLKPMFPFGRIGEPRDAARLIKFLVSE
EAEWITGQVIHSEGGFKR
>Mature_258_residues
MMNQLKNKVAVITGVSRLDGIGAAVCKELAELGYDIFFTYWTAYDKERPWGVDKNEQIQLKEELLKNGVKVSSMELDLTQ
NDAPKELINKVTEQLGYPYILINNAAYSTNNDFSTLTAEELDKHYMVNVRATTLLSSQFSRGFDKKYGGRIVNITSGQFQ
GPMAGELAYATTKGAIDALTSTLSAEVAHLGITVNAINPGPTDTGWMTEEIKQGLKPMFPFGRIGEPRDAARLIKFLVSE
EAEWITGQVIHSEGGFKR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=261, Percent_Identity=30.2681992337165, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI15277342, Length=267, Percent_Identity=26.9662921348315, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI7705925, Length=163, Percent_Identity=31.9018404907975, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=27.8625954198473, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503301, Length=197, Percent_Identity=25.3807106598985, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=24.7104247104247, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=31.2252964426877, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787335, Length=258, Percent_Identity=30.2325581395349, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082100, Length=270, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI2367365, Length=260, Percent_Identity=27.3076923076923, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=29.3436293436293, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789208, Length=259, Percent_Identity=27.4131274131274, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI2367175, Length=260, Percent_Identity=28.8461538461538, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=27.8625954198473, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=27.9835390946502, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=25.4826254826255, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786812, Length=168, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=276, Percent_Identity=29.7101449275362, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=260, Percent_Identity=26.9230769230769, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=276, Percent_Identity=28.6231884057971, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=276, Percent_Identity=29.7101449275362, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=29.8561151079137, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=277, Percent_Identity=29.6028880866426, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=276, Percent_Identity=27.536231884058, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=27.6752767527675, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=276, Percent_Identity=28.6231884057971, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=27.3722627737226, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=277, Percent_Identity=28.5198555956679, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=276, Percent_Identity=27.8985507246377, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=268, Percent_Identity=26.865671641791, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=25.5725190839695, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=277, Percent_Identity=26.7148014440433, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=282, Percent_Identity=28.3687943262411, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=268, Percent_Identity=26.4925373134328, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=281, Percent_Identity=28.1138790035587, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=27.2373540856031, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=28.4046692607004, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=26.1818181818182, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=280, Percent_Identity=27.8571428571429, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=261, Percent_Identity=23.3716475095785, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=25.968992248062, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=263, Percent_Identity=25.4752851711027, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=192, Percent_Identity=26.5625, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=285, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=26.8199233716475, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI28571526, Length=271, Percent_Identity=28.7822878228782, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI23397609, Length=261, Percent_Identity=27.9693486590038, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643142, Length=262, Percent_Identity=29.0076335877863, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=30.9433962264151, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=263, Percent_Identity=28.1368821292776, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=28.6259541984733, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644337, Length=219, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 28538; Mature: 28538

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNQLKNKVAVITGVSRLDGIGAAVCKELAELGYDIFFTYWTAYDKERPWGVDKNEQIQL
CCCHHHHHEEEEECHHHHCCHHHHHHHHHHHCCHHEEEEEHHHCCCCCCCCCCCCCCHHH
KEELLKNGVKVSSMELDLTQNDAPKELINKVTEQLGYPYILINNAAYSTNNDFSTLTAEE
HHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCEECCCCCCCEEEHHH
LDKHYMVNVRATTLLSSQFSRGFDKKYGGRIVNITSGQFQGPMAGELAYATTKGAIDALT
CCCCEEEEEHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHH
STLSAEVAHLGITVNAINPGPTDTGWMTEEIKQGLKPMFPFGRIGEPRDAARLIKFLVSE
HHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
EAEWITGQVIHSEGGFKR
CCCHHEEEEEECCCCCCC
>Mature Secondary Structure
MMNQLKNKVAVITGVSRLDGIGAAVCKELAELGYDIFFTYWTAYDKERPWGVDKNEQIQL
CCCHHHHHEEEEECHHHHCCHHHHHHHHHHHCCHHEEEEEHHHCCCCCCCCCCCCCCHHH
KEELLKNGVKVSSMELDLTQNDAPKELINKVTEQLGYPYILINNAAYSTNNDFSTLTAEE
HHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCEECCCCCCCEEEHHH
LDKHYMVNVRATTLLSSQFSRGFDKKYGGRIVNITSGQFQGPMAGELAYATTKGAIDALT
CCCCEEEEEHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHH
STLSAEVAHLGITVNAINPGPTDTGWMTEEIKQGLKPMFPFGRIGEPRDAARLIKFLVSE
HHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
EAEWITGQVIHSEGGFKR
CCCHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]