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The map label for this gene is ynbA [H]

Identifier: 218232256

GI number: 218232256

Start: 3715113

End: 3716390

Strand: Reverse

Name: ynbA [H]

Synonym: BCB4264_A3806

Alternate gene names: 218232256

Gene position: 3716390-3715113 (Counterclockwise)

Preceding gene: 218235138

Following gene: 218235716

Centisome position: 68.58

GC content: 36.31

Gene sequence:

>1278_bases
TTGATGGAAGAAAAAGAAAAAGTCATATTAGTAGGCTGTCAATTGCCACAAGATGATGATGAAAAATTTATGCATTCCAT
GAAAGAGCTTGCATCACTAGCGAAGACTGCACGAGCAGAATTGTTAGTGTCAACAACGCAAAAACGACCAAAGTTTCATC
CGGCAACTTACATAGGTAAAGGGAAATTAGAAGAGCTTACAATGTTAACTGAAGAATTAGAGCCGGATGTTATTGTATTT
AATAATGAATTAACGCCGAGTCAAATTCGGAATTTATCCTCAGTATTAAATGCGAGAGTAATTGATCGAACGCAACTAAT
ACTGGATATTTTTGCGCAACGTGCGAAGTCGAGGGAAGGTAAGCTTCAAGTAGAATTAGCTCAGTTGCAATATACAATGC
CGCGTCTTATGGGGCAAGGATTGTCCTTATCGCGTCTTGGTGGTGGTATTGGAACGAGAGGACCAGGTGAGACGAAATTA
GAGACGGATCGTCGTCATATTCGATCCCGTATTGATGAAATAAAGAAACAACTTGCAGTTGTTGTGGAACATCGAAAAAG
ATATCGTGAGAGAAGAAAAGATAATAAAGTATTTCAAGTTTCGTTAATAGGGTATACAAATGCAGGGAAATCGACACTGT
TTAATAGATTAACGGAAGCTGATACGTTTGAAGAAAACCTTCTGTTTGCAACATTAGACCCAACGACGAGGAAGATGCCG
TTACCTTCTGGTTATACAGTATTACTAACTGATACTGTTGGTTTTATACAAGATTTACCCACTTCATTAATCGCTGCTTT
TCGTTCGACACTGGAAGAAGCGGGGGAAGCAGATGTCATTTTACATGTAGTTGATTCCGCGGATCCTAACTACATAGGGC
ATGAAAAAACAGTAAAACGATTATTATCAGAACTTGAAATTAACCATATTCCTATTATTACGTTATATAATAAAAAAGAT
GAATTACATCAAAACTTTATTCCGTTTCCGAAAAGTGATTTCTTAATGACTAGTGCTTTTGAAGAAAGTGATTTATTGCG
TATAAAAGAAGCGATAGAAACGAAGATGAAGAAAGAAATGGATTGTTATCGAGTGGAAATCCCTCCGAGTGAAGGTAAGT
TGTTAACGCTTTTAAAGACGGAAACTCTATTAGCAAAGATGGAGTTTCTAGAAGATAAATTTGTATATGATTGTGCAGGG
TATATTTTTACTCATTCATCGCTTAATGTGCAATTAAAGAGATTTTTAGTGGAAGAAGGAGAAAATAAAAATGTTTGA

Upstream 100 bases:

>100_bases
TCCCATGCCATGAATTTTCTCCCCCGCTAACTAGATGAAATGTGCTTCCTCTGCTATTATATTAGAAGGTTTAAATTTCG
AAAAGGATGAGTGAACATAT

Downstream 100 bases:

>100_bases
TCGTTTGAAAAATGGAGAAAAAATTGCTCCAATTGTAAAAGAAGTAGAGAGTCAGATTACAGAAGTACATAAACGTGCGG
ATGAAGTGATTGAAAGCAAT

Product: GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVF
NNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKL
ETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKKD
ELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKEMDCYRVEIPPSEGKLLTLLKTETLLAKMEFLEDKFVYDCAG
YIFTHSSLNVQLKRFLVEEGENKNV

Sequences:

>Translated_425_residues
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVF
NNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKL
ETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKKD
ELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKEMDCYRVEIPPSEGKLLTLLKTETLLAKMEFLEDKFVYDCAG
YIFTHSSLNVQLKRFLVEEGENKNV
>Mature_425_residues
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVF
NNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKL
ETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKRLLSELEINHIPIITLYNKKD
ELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKEMDCYRVEIPPSEGKLLTLLKTETLLAKMEFLEDKFVYDCAG
YIFTHSSLNVQLKRFLVEEGENKNV

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133116, Length=145, Percent_Identity=39.3103448275862, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI310133118, Length=162, Percent_Identity=37.6543209876543, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124269, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124267, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124171, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI310124169, Length=137, Percent_Identity=40.1459854014599, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1790615, Length=375, Percent_Identity=42.1333333333333, Blast_Score=278, Evalue=5e-76,
Organism=Caenorhabditis elegans, GI17561038, Length=285, Percent_Identity=32.6315789473684, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24650079, Length=285, Percent_Identity=35.0877192982456, Blast_Score=124, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 48508; Mature: 48508

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGK
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECC
GKLEELTMLTEELEPDVIVFNNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREG
CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAV
CEEEEHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
HHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHCCEEEEEECCCCCCCC
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKR
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
LLSELEINHIPIITLYNKKDELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKEM
HHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCC
DCYRVEIPPSEGKLLTLLKTETLLAKMEFLEDKFVYDCAGYIFTHSSLNVQLKRFLVEEG
CCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCC
ENKNV
CCCCC
>Mature Secondary Structure
MMEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGK
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECC
GKLEELTMLTEELEPDVIVFNNELTPSQIRNLSSVLNARVIDRTQLILDIFAQRAKSREG
CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAV
CEEEEHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMP
HHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHCCEEEEEECCCCCCCC
LPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYIGHEKTVKR
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
LLSELEINHIPIITLYNKKDELHQNFIPFPKSDFLMTSAFEESDLLRIKEAIETKMKKEM
HHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCC
DCYRVEIPPSEGKLLTLLKTETLLAKMEFLEDKFVYDCAGYIFTHSSLNVQLKRFLVEEG
CCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCC
ENKNV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]