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The map label for this gene is ugpB [H]

Identifier: 218231651

GI number: 218231651

Start: 585350

End: 586726

Strand: Direct

Name: ugpB [H]

Synonym: BCB4264_A0606

Alternate gene names: 218231651

Gene position: 585350-586726 (Clockwise)

Preceding gene: 218235995

Following gene: 218232403

Centisome position: 10.8

GC content: 37.04

Gene sequence:

>1377_bases
ATGAGTCTAGTTAAAAAAGGTGCTGCTCTATTAATGGTAGCAACAATGGCATTATCTAGTGCAGCTTGTTCAAATAGTAA
AACAGAGGGAAAACCTGAAGCACAGGCAAAAGTAGCACCAGTTGAAAAAAATGGTGATAAAACTGTAATTCGCTTCTGGC
ATGCGATGGGTGGAAAAACACAAGGAGTATTAGATGGTCTTGTTGCAGACTATAATAAGTCGCAAAATAAATATGAGATA
AAGGCAGAGTTCCAAGGGACATATGAAGAGTCTTTAACGAAATTTAGAACGATGTCTGCAACGAAAGAAGCGCCAGCTCT
TGTTCAATCGAGTGAAATTACAACGAAATATATGATTGATAGTAAAAAAATCACACCAATTGATAGCTGGATAAAAAAAG
ATAAGTACGATACGTCAAAATTAGAAAAAGCAATTACAAATTATTATTCAGTTGATGGAAAAATGTATTCTATGCCATTT
AATTCATCTACACCAGTATTAATTTATAATAAAGATGCTTTCGCAAAGGCGGGCTTAGATCCAGAGAAAGCTCCAAAAAC
ATATGCGGAATTACAAGAAGCAGCGAAAAAGTTAACGATTAAAGAAGGCGGAAATGTAAAACAATATGGATTCTCCATGC
TTAACTACGGTTGGTTCTTTGAAGAATTGTTAGCGACACAAGGTGCTTTATATGTAGATAACGAAAACGGCCGTAAAGAT
GCTGCAAAGAAGGCGGTATTCAACGGTAAAGAAGGACAGAAAGTATTTGGAATGTTAGATGATTTAAATAAAGCTGGCGC
CCTTGGAAAGTATGGAGCAAGTTGGGATGATATTCGTGCCGCGTTCCAGTCTGGACAAGTTGCTATGTATTTAGATTCTT
CAGCAGGTGTTCGTGATTTAATCGATGCATCTAAGTTTAATGTAGGTGTTTCATATATTCCGTATCCAGAGGATTCGAAA
CAAAATGGTGTTGTTATTGGTGGAGCATCATTATGGATGACGAATATGGTTTCAGAAGAAACGCAACAAGGTGCTTGGGA
CTTTATGAAATATTTAACGAAGCCAGACGTACAAGCAAAATGGCATACTGCAACAGGTTATTTCTCAATTAATCCAGATG
CATATAATGAGCCATTAGTAAAAGAGCAATATGAAAAATATCCACAGTTGAAAGTAACAGTAGATCAATTGCAAGCGACG
AAGCAATCTCCAGCAACACAAGGGGCTTTAATTAGTGTATTCCCAGAATCACGAGATGCAGTTGTAAAAGCATTAGAAGC
GATGTATGACGGGAAGAATAGTAAAGAAGCGTTAGATGAAGCTGCCAAAGCAACAGATAGAGCAATTAGCATTTCAGCTC
GTACGAGTCAAAAATAA

Upstream 100 bases:

>100_bases
CGTTATTCCAACATTGATTTTACTATTTTTAGGGCAAAAGCAATTACAACAAGGATTAACAAAAGGTGCAATTAAATAAC
TAAGAGAAGGTGGGATTTAA

Downstream 100 bases:

>100_bases
GAGAAAGCCGTATCCTTAAAAGGGATACGGCTTTCTTTATAGGGAGATAAGGGATCAAAGAAATGATGAAGTCTTATCTC
TTTTATATGAGTAAAGGGTC

Product: putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKTQGVLDGLVADYNKSQNKYEI
KAEFQGTYEESLTKFRTMSATKEAPALVQSSEITTKYMIDSKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPF
NSSTPVLIYNKDAFAKAGLDPEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
AAKKAVFNGKEGQKVFGMLDDLNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDLIDASKFNVGVSYIPYPEDSK
QNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQAT
KQSPATQGALISVFPESRDAVVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK

Sequences:

>Translated_458_residues
MSLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKTQGVLDGLVADYNKSQNKYEI
KAEFQGTYEESLTKFRTMSATKEAPALVQSSEITTKYMIDSKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPF
NSSTPVLIYNKDAFAKAGLDPEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
AAKKAVFNGKEGQKVFGMLDDLNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDLIDASKFNVGVSYIPYPEDSK
QNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQAT
KQSPATQGALISVFPESRDAVVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK
>Mature_457_residues
SLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKTQGVLDGLVADYNKSQNKYEIK
AEFQGTYEESLTKFRTMSATKEAPALVQSSEITTKYMIDSKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPFN
SSTPVLIYNKDAFAKAGLDPEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKDA
AKKAVFNGKEGQKVFGMLDDLNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDLIDASKFNVGVSYIPYPEDSKQ
NGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQATK
QSPATQGALISVFPESRDAVVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=413, Percent_Identity=35.8353510895884, Blast_Score=216, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50370; Mature: 50239

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC
QGVLDGLVADYNKSQNKYEIKAEFQGTYEESLTKFRTMSATKEAPALVQSSEITTKYMID
HHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHCCHHHCCCCCCEEEEEC
SKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPFNSSTPVLIYNKDAFAKAGLD
CCCCCCHHHHHHHCCCCHHHHHHHHHHHEECCCEEEECCCCCCCCEEEECCCHHHHCCCC
PEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
HHHCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
AAKKAVFNGKEGQKVFGMLDDLNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDL
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHH
IDASKFNVGVSYIPYPEDSKQNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAK
HHHHHHCCCEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEE
WHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQATKQSPATQGALISVFPESRDA
EEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEECCCCHHH
VVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK
HHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCC
>Mature Secondary Structure 
SLVKKGAALLMVATMALSSAACSNSKTEGKPEAQAKVAPVEKNGDKTVIRFWHAMGGKT
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC
QGVLDGLVADYNKSQNKYEIKAEFQGTYEESLTKFRTMSATKEAPALVQSSEITTKYMID
HHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHCCHHHCCCCCCEEEEEC
SKKITPIDSWIKKDKYDTSKLEKAITNYYSVDGKMYSMPFNSSTPVLIYNKDAFAKAGLD
CCCCCCHHHHHHHCCCCHHHHHHHHHHHEECCCEEEECCCCCCCCEEEECCCHHHHCCCC
PEKAPKTYAELQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKD
HHHCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
AAKKAVFNGKEGQKVFGMLDDLNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDL
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHH
IDASKFNVGVSYIPYPEDSKQNGVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAK
HHHHHHCCCEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEE
WHTATGYFSINPDAYNEPLVKEQYEKYPQLKVTVDQLQATKQSPATQGALISVFPESRDA
EEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEECCCCHHH
VVKALEAMYDGKNSKEALDEAAKATDRAISISARTSQK
HHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]