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The map label for this gene is ylmB [H]

Identifier: 218231572

GI number: 218231572

Start: 483172

End: 484446

Strand: Direct

Name: ylmB [H]

Synonym: BCB4264_A0497

Alternate gene names: 218231572

Gene position: 483172-484446 (Clockwise)

Preceding gene: 218234571

Following gene: 218236093

Centisome position: 8.92

GC content: 38.12

Gene sequence:

>1275_bases
ATGAATGAAAAAGTTTCACAGCTATTAGAGCAGATTGATTTACGAAAAGATGAGTTACTAGAGCTTACAAAGAATTTAAT
TCGTTTTGAAACACCAGCACCGCCGGCGAGAAATACAAATGAGGCACAACAATTTGTTGCAGAGTTTCTAAGAGAACAAA
ATTTTAGTGTTGATAAATGGGATGTATATCCTAATGATCCGAACGTTGTTGGTGTGAAAAAAGGGGCAAAAAGTGACTCA
TATAAAAGTCTTATTATTAATGGACATATGGATGTAGCTGAAGTATCGGCAGATGAGGCGTGGGAAACAAATCCGTTTGA
GCCATTTATAAAAGATGGTTGGTTAGTTGGACGTGGTGCAGCTGATATGAAAGGGGGACTAGCTGGAGCGCTATTTGCTA
TTCAGCTATTACAAGAAGCTGGTATTGAATTACCTGGAGATTTAATCTTTCAATCCGTAATTGGAGAAGAAGTTGGAGAA
GCTGGTACACTTCAATGCTGCAAAAGAGGTTATGATGCTGATTTTGCAGTCGTAGTGGATACGAGTAATTTACATATGCA
AGGACAGGGCGGCGTAATTACTGGCTGGATTACTGTGAAAAGCCCTCAAACGTTTCATGATGCAACGCGTAGGCAAATGA
TTCATGCTGGAGGACGTTTATTTGGAGCGAGTGCAATTGAAAAAATGATGAAAATTGTGCAAAGTTTGCAAGAATTAGAG
CGTCATTGGGCAGTTATGAAAACATATGAAGGCTATCCGTCTGGAACAACAACAATTAATCCAGCTGTTATTGAGGGTGG
AAGACATGCAGCTTTTATTGCGGATGAGTGCCGGTTATGGATAACAGTGCACTTTTATCCGAATGAAACACATGAACAAA
TAATAAAAGAAATTGAAGAGTATATCGGTAAAGTAGCAGCTGCCGATCCATGGCTAAGTGAAAATCCACCACAATTTAAG
TGGGGCGGAGAATCAATGATTATGGATCGTGGCGAAATTTTCCCTTCTTTAGAAATAGATAGTGAACATACAGCTGTAAA
AACGCTTAGCTCAGTACATGAATCAATTCTTTCTAAAAACGCAATTTTAGATATGTCTGCAACGGTAACGGATGGTGGTT
GGTTTAGTGAATTTCATATTCCGGCTGTTATTTACGGACCAGGCACATTAGAGGAAGCTCATTCAATAAATGAGAAAGTA
GAAGTAGAGCAGTTAATTGAATTTACAAAAGTAATAACAGCATTTATATATGAATGGTGTCATATGAAAAAATAG

Upstream 100 bases:

>100_bases
CTAATATGAATTAATTTGGAGACTGTAAGATTTGTAAACAGTCTCTTTTTTTGTGAAAATAAAGTTGGAAACATACTACG
TATGTAAAGGGGAATTAGCG

Downstream 100 bases:

>100_bases
ATTAGTATGTTAAAATCGTACAGGTATGTATACTTGTACGATTTTTTAGTGAACTATTTCAGAGTTAAATAGAAACAACT
GAAATAGTTCTTTATTTTTC

Product: acetylornithine deacetylase

Products: acetate; L-ornithine

Alternate protein names: Amidohydrolase; Formylaminopyrimidine deformylase [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MNEKVSQLLEQIDLRKDELLELTKNLIRFETPAPPARNTNEAQQFVAEFLREQNFSVDKWDVYPNDPNVVGVKKGAKSDS
YKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGE
AGTLQCCKRGYDADFAVVVDTSNLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIMDRGEIFPSLEIDSEHTAVKTLSSVHESILSKNAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EVEQLIEFTKVITAFIYEWCHMKK

Sequences:

>Translated_424_residues
MNEKVSQLLEQIDLRKDELLELTKNLIRFETPAPPARNTNEAQQFVAEFLREQNFSVDKWDVYPNDPNVVGVKKGAKSDS
YKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGE
AGTLQCCKRGYDADFAVVVDTSNLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIMDRGEIFPSLEIDSEHTAVKTLSSVHESILSKNAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EVEQLIEFTKVITAFIYEWCHMKK
>Mature_424_residues
MNEKVSQLLEQIDLRKDELLELTKNLIRFETPAPPARNTNEAQQFVAEFLREQNFSVDKWDVYPNDPNVVGVKKGAKSDS
YKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGAADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGE
AGTLQCCKRGYDADFAVVVDTSNLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEEYIGKVAAADPWLSENPPQFK
WGGESMIMDRGEIFPSLEIDSEHTAVKTLSSVHESILSKNAILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKV
EVEQLIEFTKVITAFIYEWCHMKK

Specific function: Catalyzed the deformylation of formylaminopyrimidine to give aminopyrimidine [H]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=343, Percent_Identity=25.0728862973761, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1790395, Length=339, Percent_Identity=22.1238938053097, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788816, Length=402, Percent_Identity=23.8805970149254, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193211059, Length=175, Percent_Identity=29.7142857142857, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563146, Length=181, Percent_Identity=27.6243093922652, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319758, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 47274; Mature: 47274

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKVSQLLEQIDLRKDELLELTKNLIRFETPAPPARNTNEAQQFVAEFLREQNFSVDKW
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
DVYPNDPNVVGVKKGAKSDSYKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGA
ECCCCCCCEEEECCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHCCEEEECCC
ADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGEAGTLQCCKRGYDADFAVVVD
CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
TSNLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
CCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEE
HHHHHHHHHCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHH
YIGKVAAADPWLSENPPQFKWGGESMIMDRGEIFPSLEIDSEHTAVKTLSSVHESILSKN
HHHHHHCCCCCCCCCCCCCEECCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHCC
AILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKVEVEQLIEFTKVITAFIYEWC
CEEEEEEEEECCCCEEEECCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
HMKK
HCCC
>Mature Secondary Structure
MNEKVSQLLEQIDLRKDELLELTKNLIRFETPAPPARNTNEAQQFVAEFLREQNFSVDKW
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
DVYPNDPNVVGVKKGAKSDSYKSLIINGHMDVAEVSADEAWETNPFEPFIKDGWLVGRGA
ECCCCCCCEEEECCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHCCEEEECCC
ADMKGGLAGALFAIQLLQEAGIELPGDLIFQSVIGEEVGEAGTLQCCKRGYDADFAVVVD
CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEE
TSNLHMQGQGGVITGWITVKSPQTFHDATRRQMIHAGGRLFGASAIEKMMKIVQSLQELE
CCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RHWAVMKTYEGYPSGTTTINPAVIEGGRHAAFIADECRLWITVHFYPNETHEQIIKEIEE
HHHHHHHHHCCCCCCCCCCCHHEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHH
YIGKVAAADPWLSENPPQFKWGGESMIMDRGEIFPSLEIDSEHTAVKTLSSVHESILSKN
HHHHHHCCCCCCCCCCCCCEECCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHCC
AILDMSATVTDGGWFSEFHIPAVIYGPGTLEEAHSINEKVEVEQLIEFTKVITAFIYEWC
CEEEEEEEEECCCCEEEECCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
HMKK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]