Click here to switch to the map view.

The map label for this gene is ydbS [H]

Identifier: 218231566

GI number: 218231566

Start: 1059391

End: 1059867

Strand: Direct

Name: ydbS [H]

Synonym: BCB4264_A1090

Alternate gene names: 218231566

Gene position: 1059391-1059867 (Clockwise)

Preceding gene: 218230870

Following gene: 218235400

Centisome position: 19.55

GC content: 37.32

Gene sequence:

>477_bases
ATGGATCCATTGAAAAATGAAATTCACCCTGACATGGTCAAGGTGTGGAAAGCGCGTTCTTTAATTGAGCTAGGAATCAG
TATTATAGTCATTTTTGCATATCTTTTCTTTATGATTAAGTTTAATTGGTGGGCTTGGATTTTCTATGTGCTCATCGGAT
TAACAATCGTATATACACCGTTTGATTACTTTACGTTTCCGAAACTACGTCAACGTTATTACAGCTACCAACTAAATGAA
GAAGAACTTGAAATTCAGCATGGCCTTTTCGTTGTTAAGCGCGTATTAGTGCCGATGATTCGTGTACAGCACGTAACGAT
TGAACAAGGGCCAATTATGAGAAAATACGGATTAGCAGAATTACACATTTCAACAGCAGCAACTTCTCATAGCATCCCAG
GTTTAACGATGTATGAAGCTGAAATGTTGAAAACGAAAATCGCAGAATTAGCGAAAGTGAGTGATGAGGATGTATAA

Upstream 100 bases:

>100_bases
CCTGAGAAGAAAGAAGATTAAATTCCAATTTTCTGTAAAGTTACGTAAAATATAGATTGAGAGTATTCATATATTAGATT
ACTAGATTTGGAGTGGTTAC

Downstream 100 bases:

>100_bases
AAGGCAGCATCCAATCACGATGTTATTAGAGTTAAAAATAACAGACTTTATACCACTCATTATTTTCATGTTTAGCTTAA
ACGGAAAGTTCCCGTTTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MDPLKNEIHPDMVKVWKARSLIELGISIIVIFAYLFFMIKFNWWAWIFYVLIGLTIVYTPFDYFTFPKLRQRYYSYQLNE
EELEIQHGLFVVKRVLVPMIRVQHVTIEQGPIMRKYGLAELHISTAATSHSIPGLTMYEAEMLKTKIAELAKVSDEDV

Sequences:

>Translated_158_residues
MDPLKNEIHPDMVKVWKARSLIELGISIIVIFAYLFFMIKFNWWAWIFYVLIGLTIVYTPFDYFTFPKLRQRYYSYQLNE
EELEIQHGLFVVKRVLVPMIRVQHVTIEQGPIMRKYGLAELHISTAATSHSIPGLTMYEAEMLKTKIAELAKVSDEDV
>Mature_158_residues
MDPLKNEIHPDMVKVWKARSLIELGISIIVIFAYLFFMIKFNWWAWIFYVLIGLTIVYTPFDYFTFPKLRQRYYSYQLNE
EELEIQHGLFVVKRVLVPMIRVQHVTIEQGPIMRKYGLAELHISTAATSHSIPGLTMYEAEMLKTKIAELAKVSDEDV

Specific function: Unknown

COG id: COG3402

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0699 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005182 [H]

Pfam domain/function: PF03703 DUF304 [H]

EC number: NA

Molecular weight: Translated: 18590; Mature: 18590

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLKNEIHPDMVKVWKARSLIELGISIIVIFAYLFFMIKFNWWAWIFYVLIGLTIVYTP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDYFTFPKLRQRYYSYQLNEEELEIQHGLFVVKRVLVPMIRVQHVTIEQGPIMRKYGLAE
CHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCHHH
LHISTAATSHSIPGLTMYEAEMLKTKIAELAKVSDEDV
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDPLKNEIHPDMVKVWKARSLIELGISIIVIFAYLFFMIKFNWWAWIFYVLIGLTIVYTP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDYFTFPKLRQRYYSYQLNEEELEIQHGLFVVKRVLVPMIRVQHVTIEQGPIMRKYGLAE
CHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCHHH
LHISTAATSHSIPGLTMYEAEMLKTKIAELAKVSDEDV
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]