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The map label for this gene is ymfC [H]

Identifier: 218231423

GI number: 218231423

Start: 3809077

End: 3809763

Strand: Reverse

Name: ymfC [H]

Synonym: BCB4264_A3891

Alternate gene names: 218231423

Gene position: 3809763-3809077 (Counterclockwise)

Preceding gene: 218232354

Following gene: 218231130

Centisome position: 70.3

GC content: 35.66

Gene sequence:

>687_bases
GTGATTGATCACATCAAAGAAAAAATTAAAGATGGCGCTTATAAAGAACGACAAAAGTTACCATCAGAGTTTGATTTAGC
GAAAGAACTTGGCGTAAGTAGAGCGACTTTAAGGGAAGCGTTGCGTATTTTAGAAGAAGAAAATGTTGTCATTCGTAGAC
ATGGTGTAGGGACATTTGTAAATGCAAAGCCATTATTTTCTTCTGGAATAGAACAACTTTCTAGTATTACAGATATGATT
TCTAGTGTGGGGAAAACACCAGGAACAATCTTTTTATCATCATCTACTACAACTTTAACAGAAGAGGAAAAAGAGAAGTT
TAATAGTGAAGATGGTTTTAATGCAGTGATGATTGAACGCGTGCGTACAGCAGATGGGGAACCTGTTGTGTATTGTATCG
ATAAACTTGCAAAAGAAATATTGCCAGACTTATCGGGTTACAATGAGGAATCATTATTAACGGTGATACATAATAACACG
CATAAGCGCATAACATATGCGGTTGCTCACATTGAGCCAATTGGCTATCACCCTAAAATCTCACCAATTTTAGAATGTGA
GCCTGAAACAGCACTGCTTGTATTAAAACAAATGCACTATGATCAAAATGATGAGCCAATCTTATATTCTATCAATTACT
TTAGAGCTGATAAATTTAGCTTCCACGTATTAAGAAAGCGTATGTAG

Upstream 100 bases:

>100_bases
TGAAAAAAGAGAAAAGAAGTCTTACATCAGAGGTCGAATAATTGAAATGCGGGGGAGTCTTATGTCAGTAAAATCTGATA
GTCGTCACCTATATCTACGG

Downstream 100 bases:

>100_bases
GTAAATTCCTTTTTAGGGAGGTGACAGCAAGAAGTAAGGAACAGCAGCGTAAGAATAAATAAATATATATCATTTTTGGA
GGGGTTTCTAGTATGAAGAA

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMI
SSVGKTPGTIFLSSSTTTLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNT
HKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM

Sequences:

>Translated_228_residues
MIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMI
SSVGKTPGTIFLSSSTTTLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNT
HKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM
>Mature_228_residues
MIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMI
SSVGKTPGTIFLSSSTTTLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNT
HKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=222, Percent_Identity=26.5765765765766, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082252, Length=230, Percent_Identity=25.2173913043478, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25940; Mature: 25940

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFV
CCHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCEE
NAKPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTTLTEEEKEKFNSEDGFNAVMIER
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHH
VRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNTHKRITYAVAHIEPIGYHPKI
HHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCC
SPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM
CCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHCC
>Mature Secondary Structure
MIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFV
CCHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCEE
NAKPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTTLTEEEKEKFNSEDGFNAVMIER
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHH
VRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNTHKRITYAVAHIEPIGYHPKI
HHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCC
SPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFHVLRKRM
CCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]