Click here to switch to the map view.

The map label for this gene is ytxD [H]

Identifier: 218231406

GI number: 218231406

Start: 1612564

End: 1613397

Strand: Direct

Name: ytxD [H]

Synonym: BCB4264_A1693

Alternate gene names: 218231406

Gene position: 1612564-1613397 (Clockwise)

Preceding gene: 218232776

Following gene: 218233445

Centisome position: 29.76

GC content: 34.65

Gene sequence:

>834_bases
ATGGGAGAGAAAAATCAAGTATTAGCTAGACCACAAAGAAGAAAAAGGAAGTTTGATATTTCTAGCCCAGTGGGCATTAT
AGTAGGTTTCATTATAGTGATAGCGGCAATTATGCTTGGCGGCGGTGGAATAAAAGCTTTCAAAAACTTTTTAGATGTTT
CATCTATTTTAATTGTCATAGGGGGAACAACAGCGACAATTGTTGTGGCATATCGATTTGGAGAAATAAAAAAATATACG
AAAAGCATTTTTACTGTTTTACATAGAAGAGAAGAAGATTTAGAACAGTTAACGGATTTGTTTGTCGATTTTTCGAAAAA
GTCTAAAAAGCACGGCTTGCTTTCTTTAGAGGTAGATGGAGAGCAAGTGGATAATCCTTTTATTCAAAAAGGAATTCGAT
TAATGTTAAGCGGTTACGATGAAGATGAATTAAAAGAAGTGTTATTGAAAGATATTGAAACGGAAGTGTATGAGTTAAGA
AAAGGAGCAGCATTATTAGATAAAATTGGTGATTTTGCTCCAGCTTGGGGCATGATAGGGACTTTAATTGGTCTTATCAT
TATGCTCCAAAACTTACAAGATACATCGCAAATTGGTACAGGGATGGCAGTTGCGATGTTAACGACATTATATGGGTCTG
TACTTGCGAATATGATTGCAATCCCTCTTGCGGAAAAAGTATATCGTGGTATTGAAGATTTATATACAGAGAAGAAGTTT
GTAATAGAAGCAATTTCAGAATTGTATCGTGGACAAATCCCTTCTAAATTAAAGTTGAAACTGGATACATACGTATACGA
AACAAAGGTAAAAAAGGTAAAAGGAGCAGCCTAA

Upstream 100 bases:

>100_bases
GCGATAAACAGATGATAAGCGTATAATACATGTTATATGTGAAAACGTATTATTAAAATAAAAAAATGTTATATAAAAAT
GGAAAGGAAAGGGCAGAAAT

Downstream 100 bases:

>100_bases
TATTTCAAGGAGTGGTATGATGAGTAAAGGACCGCAAAAGGGATCGCCTCGTTGGATGACGACTTTTACAGATTTAACGA
TGTTATTATTAACTTTCTTT

Product: flagellar motor protein MotP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MGEKNQVLARPQRRKRKFDISSPVGIIVGFIIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIKKYT
KSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLLKDIETEVYELR
KGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKF
VIEAISELYRGQIPSKLKLKLDTYVYETKVKKVKGAA

Sequences:

>Translated_277_residues
MGEKNQVLARPQRRKRKFDISSPVGIIVGFIIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIKKYT
KSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLLKDIETEVYELR
KGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKF
VIEAISELYRGQIPSKLKLKLDTYVYETKVKKVKGAA
>Mature_276_residues
GEKNQVLARPQRRKRKFDISSPVGIIVGFIIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIKKYTK
SIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLLKDIETEVYELRK
GAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFV
IEAISELYRGQIPSKLKLKLDTYVYETKVKKVKGAA

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 30783; Mature: 30652

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKNQVLARPQRRKRKFDISSPVGIIVGFIIVIAAIMLGGGGIKAFKNFLDVSSILIVI
CCCCCCHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEE
GGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
EQVDNPFIQKGIRLMLSGYDEDELKEVLLKDIETEVYELRKGAALLDKIGDFAPAWGMIG
HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TLIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKF
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIEAISELYRGQIPSKLKLKLDTYVYETKVKKVKGAA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GEKNQVLARPQRRKRKFDISSPVGIIVGFIIVIAAIMLGGGGIKAFKNFLDVSSILIVI
CCCCCHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEE
GGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
EQVDNPFIQKGIRLMLSGYDEDELKEVLLKDIETEVYELRKGAALLDKIGDFAPAWGMIG
HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TLIGLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKF
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIEAISELYRGQIPSKLKLKLDTYVYETKVKKVKGAA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934817; 9387221; 9384377 [H]