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The map label for this gene is yffB [H]

Identifier: 218231378

GI number: 218231378

Start: 2678771

End: 2679172

Strand: Reverse

Name: yffB [H]

Synonym: BCB4264_A2779

Alternate gene names: 218231378

Gene position: 2679172-2678771 (Counterclockwise)

Preceding gene: 218234884

Following gene: 218232006

Centisome position: 49.44

GC content: 32.34

Gene sequence:

>402_bases
ATGAAATATTCTAAAGCTACAAATTATGCTCTTCATACAATGCTTTTTCTGGCAAAGGCTACACCAAATAAGTTAGTTAG
TGTTCACCAATTAGCAGAAATGCAAAATGTTTCACCAACGTACTTGTCTAAAATACTAACTAAGTTGACGAAGGAAGGGA
TGATACATTCATCATCTGGTCCAAAGGGCGGTTACTCGCTTAGTAAGAATTGGGAAGATATTTCATTTTTAGATATTATA
CATGCAATTGAAGGTAAAACATCATTGTTTGAATGTTGTTTACATGACAAACCTGGATGTTTAATTAATGAAGTAATGCT
TGCAGCAGAAGAGAAAATGGAAGAAGAGTTACGAAATCAAAAAATCGTAGATCTTGCGAAAAAAATAAAAGTGGATTTTT
AA

Upstream 100 bases:

>100_bases
CTTGTGAAGAAATAATTTTTTATGGAGCATTACAAACGTTTGACATAATAAAAAAATAAAGTTATTGTAGATACATGAAG
TCTACAATAGGGGCTGTACT

Downstream 100 bases:

>100_bases
TCTGCTTTTATTTTTAAATTAATTAAGGATAAAAAGACTCTTTGATATCTTTAATTGTAGTTAGAAAATGATATGAAGAA
GGAGAGAAGATGATGACTAA

Product: rrf2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSKNWEDISFLDII
HAIEGKTSLFECCLHDKPGCLINEVMLAAEEKMEEELRNQKIVDLAKKIKVDF

Sequences:

>Translated_133_residues
MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSKNWEDISFLDII
HAIEGKTSLFECCLHDKPGCLINEVMLAAEEKMEEELRNQKIVDLAKKIKVDF
>Mature_133_residues
MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSKNWEDISFLDII
HAIEGKTSLFECCLHDKPGCLINEVMLAAEEKMEEELRNQKIVDLAKKIKVDF

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=131, Percent_Identity=24.4274809160305, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 14960; Mature: 14960

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGCLINEVMLAAEEKMEEELRNQ
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
KIVDLAKKIKVDF
HHHHHHHHHHCCC
>Mature Secondary Structure
MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGCLINEVMLAAEEKMEEELRNQ
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
KIVDLAKKIKVDF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7773380; 11337471 [H]