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The map label for this gene is ccdA1 [H]

Identifier: 218231100

GI number: 218231100

Start: 1697577

End: 1698290

Strand: Direct

Name: ccdA1 [H]

Synonym: BCB4264_A1792

Alternate gene names: 218231100

Gene position: 1697577-1698290 (Clockwise)

Preceding gene: 218234808

Following gene: 218235053

Centisome position: 31.33

GC content: 36.97

Gene sequence:

>714_bases
ATGAATGCAGCAGATTTAACAATTTGGCTTGTGGCTGGGGCGGGAGTATTGTCATTTATATCACCGTGCTCTTTACCGCT
ATATCCATCTTATTTATCTTATATTACAGGTGTGTCTATTCAAGATTTAAAAGAAAATCGTGGGATTATGCAAAAATCAG
CGATTATACATACAGTATTTTTTATGATCGGATTTTCGGTTATATTTTACGCGTTAGGTTTATCGGTAAGTTGGATTGGA
ATAACATTTTCATCTAACCAAAAATTGATTCAACAAATTGGTGGGATTTTTATTGTTTTAATGGGGCTATTTATGACGGG
CTTGTTTCAGCCTAAGTGGCTTATGGCAGAGAAAAAGGTGCAGTATAGAAGTAAATCGACTGGATATATTCGCTCGATTT
TAGTCGGTATGACATATGCAGCAGGTTGGACGCCATGTGTTGGACCGATATTTTCAGCTGTACTCATGCTTGGCGCGACG
AATCCTGAAGGGGCGCTTCTTTATATTACAGCGTATACTCTTGGGTTTGCGGTTCCATTTTTCGTGATGGCATTCTTTAT
TGGGAAGGTAAAATGGATTGTTACATATGCCAATGTCATGATGAAAATTGGCGGTGGAATGATGATTGTAACAGGTATTT
TATTGTATACAAATCAAATGACGAAAATTACAGCATTCTTTATTCGTCTATTCGGTGGATTTACAGGTTTTTAA

Upstream 100 bases:

>100_bases
GTTTATTCTGTATGTCGGTTGTACTTATTGTCGGAGAGTGCATATAGCCTCTTTTTTTAAGAATAAACACTACTCATTGT
AGTGTTTTAGGGGGAATAAA

Downstream 100 bases:

>100_bases
AAATGAGGAGGAAGAAAAGTGAAGAAACTAATTGCTATTATACTAGTAGGTGCTCTCGCTTGGGCGGGGGTTAACTTTTA
TAATTCAAAGAAAGAAGAAA

Product: cytochrome c-type biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFMIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKVKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF

Sequences:

>Translated_237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFMIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKVKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
>Mature_237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFMIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKVKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26041; Mature: 26041

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVF
CCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
FMIGFSVIFYALGLSVSWIGITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKV
HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPEGALLYITAYTLGFAVPF
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
FVMAFFIGKVKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVF
CCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
FMIGFSVIFYALGLSVSWIGITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKV
HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPEGALLYITAYTLGFAVPF
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
FVMAFFIGKVKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]