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The map label for this gene is rtcB [H]

Identifier: 218230969

GI number: 218230969

Start: 3129493

End: 3130452

Strand: Reverse

Name: rtcB [H]

Synonym: BCB4264_A3237

Alternate gene names: 218230969

Gene position: 3130452-3129493 (Counterclockwise)

Preceding gene: 218233281

Following gene: 218234184

Centisome position: 57.77

GC content: 34.06

Gene sequence:

>960_bases
ATGGAAGTTGTGATGATTAATAAGAAAAAAGAGGAAATCAATTTCGATCACTTAGACGAAACGATACGTAAATTTGTCCC
AAGTGGTTTTCGTATTCGAGATAAGGAACATCGATTTTCAAAAATGATTGATTTTGATAGTGTAAGAGCCCCGTTTACAG
TGCAACGTGCTCAAAAAAGCATTGGTACACTTGGCGGGGGCAATCATTTTGTCGAACTAAATGAGGATGATAAAGGAAAT
GTATACATTGTCATTCATAGTGGTTCGCGTAATTTAGGGAAACAAGTAGCAGAGTATTATCAAAACTTTGCTTACGAGCA
ACTTATAAACGTTAAATCTATTAAAGAAGAAATGATTGAGCGTTTAACGAAAGAAGGTAGACAACAAGAAATACATGAAG
CTTTACGTGGAATTAAGAAACCGGTGATTCGTAAAGAATTAGCTTATTTAGAAGGACAAGGATTTAAAGATTACATGAAT
GATATGAAAATTGCTCAAAAATATGCGGAGTTAAATCGTAAAGCAATGATTGATGAAATCGTCACTAAAATGGATTGGAA
AGTAACAGATCAATTCACTACAATTCATAACTACATCGATATGGAAAATATGATTCTACGAAAAGGTGCTATTTCAGCCC
AGAAAGATGAACGAGTAATCATTCCAATTAATATGAGAGACGGTTCAATCATTGCATTTGGTAAAGGGAATCCAGATTGG
AACTTTTCTGGACCGCATGGGGCAGGACGTATTATGAGCCGTAAGAAGGCGAAAGAAGTACTTAACTTAGAGGATTTTCA
AAATACAATGACAGAGGTTTGGACGACATCTGTTGCAGAAAGTACTTTAGATGAAGCACCAATGGTATATAAACCAATGG
ATGAAATTATTGAGAATACAAAAGAAACAATTGATATTAAACATATTATTAAGCCACTTTACAATTTTAAGGCGAATTAA

Upstream 100 bases:

>100_bases
CGGTGAGCCTACAGTAGAGACTGCATATCTCGATGACTGTAGAGAAGGTATAGTCCACTCTTTCAGGAAACTGAGAGGTA
AGTAAGATATTGGTTGTGGC

Downstream 100 bases:

>100_bases
AAGAGGAGTAATGTTTATTAAAGAAAGAGAACTTGAAAAGATAGCATATTTTGTGGCGGTTATATAACAGAGATTAAAAA
GACAACATATTAAACTAAGA

Product: gp160

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MEVVMINKKKEEINFDHLDETIRKFVPSGFRIRDKEHRFSKMIDFDSVRAPFTVQRAQKSIGTLGGGNHFVELNEDDKGN
VYIVIHSGSRNLGKQVAEYYQNFAYEQLINVKSIKEEMIERLTKEGRQQEIHEALRGIKKPVIRKELAYLEGQGFKDYMN
DMKIAQKYAELNRKAMIDEIVTKMDWKVTDQFTTIHNYIDMENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDW
NFSGPHGAGRIMSRKKAKEVLNLEDFQNTMTEVWTTSVAESTLDEAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN

Sequences:

>Translated_319_residues
MEVVMINKKKEEINFDHLDETIRKFVPSGFRIRDKEHRFSKMIDFDSVRAPFTVQRAQKSIGTLGGGNHFVELNEDDKGN
VYIVIHSGSRNLGKQVAEYYQNFAYEQLINVKSIKEEMIERLTKEGRQQEIHEALRGIKKPVIRKELAYLEGQGFKDYMN
DMKIAQKYAELNRKAMIDEIVTKMDWKVTDQFTTIHNYIDMENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDW
NFSGPHGAGRIMSRKKAKEVLNLEDFQNTMTEVWTTSVAESTLDEAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN
>Mature_319_residues
MEVVMINKKKEEINFDHLDETIRKFVPSGFRIRDKEHRFSKMIDFDSVRAPFTVQRAQKSIGTLGGGNHFVELNEDDKGN
VYIVIHSGSRNLGKQVAEYYQNFAYEQLINVKSIKEEMIERLTKEGRQQEIHEALRGIKKPVIRKELAYLEGQGFKDYMN
DMKIAQKYAELNRKAMIDEIVTKMDWKVTDQFTTIHNYIDMENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDW
NFSGPHGAGRIMSRKKAKEVLNLEDFQNTMTEVWTTSVAESTLDEAPMVYKPMDEIIENTKETIDIKHIIKPLYNFKAN

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=337, Percent_Identity=24.6290801186944, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI2367224, Length=279, Percent_Identity=32.258064516129, Blast_Score=133, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24585217, Length=334, Percent_Identity=24.5508982035928, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 36988; Mature: 36988

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVVMINKKKEEINFDHLDETIRKFVPSGFRIRDKEHRFSKMIDFDSVRAPFTVQRAQKS
CEEEEECCCHHHCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHCHHCCCCCHHHHHHHHH
IGTLGGGNHFVELNEDDKGNVYIVIHSGSRNLGKQVAEYYQNFAYEQLINVKSIKEEMIE
HCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTKEGRQQEIHEALRGIKKPVIRKELAYLEGQGFKDYMNDMKIAQKYAELNRKAMIDEI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTKMDWKVTDQFTTIHNYIDMENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDW
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCCC
NFSGPHGAGRIMSRKKAKEVLNLEDFQNTMTEVWTTSVAESTLDEAPMVYKPMDEIIENT
CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KETIDIKHIIKPLYNFKAN
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEVVMINKKKEEINFDHLDETIRKFVPSGFRIRDKEHRFSKMIDFDSVRAPFTVQRAQKS
CEEEEECCCHHHCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHCHHCCCCCHHHHHHHHH
IGTLGGGNHFVELNEDDKGNVYIVIHSGSRNLGKQVAEYYQNFAYEQLINVKSIKEEMIE
HCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTKEGRQQEIHEALRGIKKPVIRKELAYLEGQGFKDYMNDMKIAQKYAELNRKAMIDEI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTKMDWKVTDQFTTIHNYIDMENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDW
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCCC
NFSGPHGAGRIMSRKKAKEVLNLEDFQNTMTEVWTTSVAESTLDEAPMVYKPMDEIIENT
CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KETIDIKHIIKPLYNFKAN
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]