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The map label for this gene is lyc [H]

Identifier: 218230956

GI number: 218230956

Start: 3694612

End: 3695658

Strand: Reverse

Name: lyc [H]

Synonym: BCB4264_A3785

Alternate gene names: 218230956

Gene position: 3695658-3694612 (Counterclockwise)

Preceding gene: 218232113

Following gene: 218232922

Centisome position: 68.2

GC content: 38.4

Gene sequence:

>1047_bases
ATGCAAAACAGATCAAGTTCAAATGTTACGTTTATTGATGTGTCTCATTGGGAAGGAAATATTGATTGGAATGCAGTGAA
GGCATCTGGAATTCCAGCAGCGTATGCAAAAGCGACAGAAGGTGTAAACTACATTGATCCTACTTTTACTAAGAATGTAC
AAGCAGCACGAAATGCGAATGTATTAATTGGTGCATACCATTTTGCACGCCCAGAACAAAATGATGCAATTTCAGAGGCA
AAATATTTTGTGAGTATATTACAAAATAACCAGACAGACTTAATGCCAGTTCTGGATTTAGAATCACCAATAGATCCGAG
TAACAGTAATTTAACTGGTAACGCTATATCGAATTGGGCAAGAAGCTTCATAAATTATGTGAAACAGGCTACTGGAAAAG
ATGTAATGTTATATACAGGAGTTTGGTATATTAATGAGTTCGGAATTAGCGGATTAAGTGATATACCGCTTTGGATTGCT
AAATACTCGAGTACACCGCCTGCTGATGCTGGTGGATGGACAACGTGGACAGCGTGGCAGTACACAGATTCTGGACAAAT
TTCAGGCGTAGGAAATTGTGATGTATCAGCTGCAGTTTCATTAGAAGCTTTAAAAGGGAATGGAGCAAGTGGTGGAGGTA
ATGTTTCCCCGCCTAATAATGCAACTCCAGTGTACGGGGTTGCTATAATTAATGGAGATAATGTGAATTTGAGAAGTGGA
CCATCTTTGCAGTCTAGTGTAATTCGCCAATTGAATCGTGGCGAAACATATGAAGTTTGGGGAGAACAAGATGGATGGCT
TTGTTTAGGGACAAATCAGTGGGTATATAATGATCCGAGTTATATTCAGTATAAACATTATGTGGCGACTATTACTGGTG
ATAATGTAAATTTGCGTGATGCTCCATCATTAAATGGAAATGTTATAAGACAGTTACATCATGGTGAATCGTATCGAGTA
TGGAGTAAGCAAGATAGATGGCTTTGCTTAGGGACAAATCAATGGATATACTACGATCCAAGTTATATTCAGTATGGTGT
ACAATAG

Upstream 100 bases:

>100_bases
TATGTTTACTCTTTGTTTCTATAGCATAAATGTCGTGTCCTCTTATGAAACTTGTACATATTGTATGTATACGAAGTAAA
AAAATGATAGGAGATTTTAT

Downstream 100 bases:

>100_bases
AGTGAAAATAAAAGGTGCCCCGTCAGAGGTGCCTTTTATTAAAAATATACAACTTTTACAAAGTCTATATCGAAACCATA
GTATACTATAATAGATATAT

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MQNRSSSNVTFIDVSHWEGNIDWNAVKASGIPAAYAKATEGVNYIDPTFTKNVQAARNANVLIGAYHFARPEQNDAISEA
KYFVSILQNNQTDLMPVLDLESPIDPSNSNLTGNAISNWARSFINYVKQATGKDVMLYTGVWYINEFGISGLSDIPLWIA
KYSSTPPADAGGWTTWTAWQYTDSGQISGVGNCDVSAAVSLEALKGNGASGGGNVSPPNNATPVYGVAIINGDNVNLRSG
PSLQSSVIRQLNRGETYEVWGEQDGWLCLGTNQWVYNDPSYIQYKHYVATITGDNVNLRDAPSLNGNVIRQLHHGESYRV
WSKQDRWLCLGTNQWIYYDPSYIQYGVQ

Sequences:

>Translated_348_residues
MQNRSSSNVTFIDVSHWEGNIDWNAVKASGIPAAYAKATEGVNYIDPTFTKNVQAARNANVLIGAYHFARPEQNDAISEA
KYFVSILQNNQTDLMPVLDLESPIDPSNSNLTGNAISNWARSFINYVKQATGKDVMLYTGVWYINEFGISGLSDIPLWIA
KYSSTPPADAGGWTTWTAWQYTDSGQISGVGNCDVSAAVSLEALKGNGASGGGNVSPPNNATPVYGVAIINGDNVNLRSG
PSLQSSVIRQLNRGETYEVWGEQDGWLCLGTNQWVYNDPSYIQYKHYVATITGDNVNLRDAPSLNGNVIRQLHHGESYRV
WSKQDRWLCLGTNQWIYYDPSYIQYGVQ
>Mature_348_residues
MQNRSSSNVTFIDVSHWEGNIDWNAVKASGIPAAYAKATEGVNYIDPTFTKNVQAARNANVLIGAYHFARPEQNDAISEA
KYFVSILQNNQTDLMPVLDLESPIDPSNSNLTGNAISNWARSFINYVKQATGKDVMLYTGVWYINEFGISGLSDIPLWIA
KYSSTPPADAGGWTTWTAWQYTDSGQISGVGNCDVSAAVSLEALKGNGASGGGNVSPPNNATPVYGVAIINGDNVNLRSG
PSLQSSVIRQLNRGETYEVWGEQDGWLCLGTNQWVYNDPSYIQYKHYVATITGDNVNLRDAPSLNGNVIRQLHHGESYRV
WSKQDRWLCLGTNQWIYYDPSYIQYGVQ

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=191, Percent_Identity=31.9371727748691, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF08239 SH3_3 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 38329; Mature: 38329

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNRSSSNVTFIDVSHWEGNIDWNAVKASGIPAAYAKATEGVNYIDPTFTKNVQAARNAN
CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCC
VLIGAYHFARPEQNDAISEAKYFVSILQNNQTDLMPVLDLESPIDPSNSNLTGNAISNWA
EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
RSFINYVKQATGKDVMLYTGVWYINEFGISGLSDIPLWIAKYSSTPPADAGGWTTWTAWQ
HHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
YTDSGQISGVGNCDVSAAVSLEALKGNGASGGGNVSPPNNATPVYGVAIINGDNVNLRSG
ECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCC
PSLQSSVIRQLNRGETYEVWGEQDGWLCLGTNQWVYNDPSYIQYKHYVATITGDNVNLRD
CCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCEEECCCCEEEEEEEEEEEECCCCCCCC
APSLNGNVIRQLHHGESYRVWSKQDRWLCLGTNQWIYYDPSYIQYGVQ
CCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCEEEECCHHEEECCC
>Mature Secondary Structure
MQNRSSSNVTFIDVSHWEGNIDWNAVKASGIPAAYAKATEGVNYIDPTFTKNVQAARNAN
CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCC
VLIGAYHFARPEQNDAISEAKYFVSILQNNQTDLMPVLDLESPIDPSNSNLTGNAISNWA
EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
RSFINYVKQATGKDVMLYTGVWYINEFGISGLSDIPLWIAKYSSTPPADAGGWTTWTAWQ
HHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
YTDSGQISGVGNCDVSAAVSLEALKGNGASGGGNVSPPNNATPVYGVAIINGDNVNLRSG
ECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCC
PSLQSSVIRQLNRGETYEVWGEQDGWLCLGTNQWVYNDPSYIQYKHYVATITGDNVNLRD
CCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCEEECCCCEEEEEEEEEEEECCCCCCCC
APSLNGNVIRQLHHGESYRVWSKQDRWLCLGTNQWIYYDPSYIQYGVQ
CCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCEEEECCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]