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The map label for this gene is ypbD [H]

Identifier: 218230814

GI number: 218230814

Start: 1475578

End: 1476141

Strand: Direct

Name: ypbD [H]

Synonym: BCB4264_A1541

Alternate gene names: 218230814

Gene position: 1475578-1476141 (Clockwise)

Preceding gene: 218231582

Following gene: 218236096

Centisome position: 27.23

GC content: 32.27

Gene sequence:

>564_bases
ATGAACATTCAAAGGCATAATGTTGAAGATATGAGTCCGCAGGAAATAAGGCTGAATCTATATATAACACAGTTAATTAT
TATCGGTATTGGCTGTTTACTGGCATATATATTATTTCAAGATGTAAAAGAAGTCTTTAATTTATGGGAATGGGAACCAG
TATCTATACTTATTATAGGTGGTTTGTTAGCGATTGGTATTGTGTTATTAGATTATGTTGCAATGCGAGTGTTTCCGGAG
TCTTGGTTTGATGATGGTGGTATTAACGATAAGATGTTTCGAGGAATGTCCGTTCTACACTTACTCGTTATTACGTTCTT
GATTGGTTTTGCAGAAGAATTTTTATTTAGAGGTGTAGTACAGACTCATTTTGGAATTGTAATTGCGAGCTTCGTATTTG
CAGTGTTACATATTCGTTATATAACAAAGCCATTTTTGTTTTGTTTCGTCTGTTTCATTAGTTTTGTCTTTGGTTATGTA
TTTGAATGGACAGGAAATTTGTTTATAACAATCTTTGCACACTTTCTTGTTGATTTTATAATGGGACTCCAATTAAGAAA
ATAA

Upstream 100 bases:

>100_bases
AAGAAGATTATAAAAAAAGACGAGCGCAACAATCGGATTTCGACTATAATTGGGAAACAGAGTTACAAAAGCTTTTCGGC
CTAGAAAAGATGGAGGAATG

Downstream 100 bases:

>100_bases
ATGGAAGGTGGTGGTGAACAACATGAGGAAACGAATTCCTGATTTTGAAGAGGAATTAGAAGTTGAGCGAGTGGAAGAAA
AAGAAAGTTTACCGCCGCGT

Product: CAAX amino terminal protease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNIQRHNVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDVKEVFNLWEWEPVSILIIGGLLAIGIVLLDYVAMRVFPE
SWFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYITKPFLFCFVCFISFVFGYV
FEWTGNLFITIFAHFLVDFIMGLQLRK

Sequences:

>Translated_187_residues
MNIQRHNVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDVKEVFNLWEWEPVSILIIGGLLAIGIVLLDYVAMRVFPE
SWFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYITKPFLFCFVCFISFVFGYV
FEWTGNLFITIFAHFLVDFIMGLQLRK
>Mature_187_residues
MNIQRHNVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDVKEVFNLWEWEPVSILIIGGLLAIGIVLLDYVAMRVFPE
SWFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYITKPFLFCFVCFISFVFGYV
FEWTGNLFITIFAHFLVDFIMGLQLRK

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 21690; Mature: 21690

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQRHNVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDVKEVFNLWEWEPVSILIIG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
GLLAIGIVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTHFGIVIASFVFAVLHIRYITKPFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
MGLQLRK
HHHHCCC
>Mature Secondary Structure
MNIQRHNVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDVKEVFNLWEWEPVSILIIG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
GLLAIGIVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTHFGIVIASFVFAVLHIRYITKPFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
MGLQLRK
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]