| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is muT4 [H]
Identifier: 213693334
GI number: 213693334
Start: 2817866
End: 2819158
Strand: Direct
Name: muT4 [H]
Synonym: Blon_2488
Alternate gene names: 213693334
Gene position: 2817866-2819158 (Clockwise)
Preceding gene: 213693332
Following gene: 213693335
Centisome position: 99.47
GC content: 63.57
Gene sequence:
>1293_bases ATGATTACGCCCGCCGACCTTGCCCGCATACTGGGGCAAACACCAGATTCGGCGGATAGCCATACCCAAGACCACCTGCT GTATACGTCCGAAACTCCGCATCATTCCGCCGATTCGGGCGATTCTTCCGATGTCGGCGGCACCGCGAGCCACTCCACCA ATCAGGCCGTTCATCAAGACGAAGTAGACGCAGTACCGACTGCGCAACATTCCGGTGTGCCCGGCACGCCCGCAACGCCC GTCACGCCCGCACCATCCGAATCCGAAATATCGGACTCCGCCAGCGACATGCCCGCACCGAAGCCGATGATGCCCACACC GGCCACCGTCTTCGGCATGCATGCCACCGTCACCATCGCCACTACCAGCGGCACTATCGAAGGGCAGGCCGATGGTATCG CCGGCGAGGCCGGTGCCGAGACGATTGCCGAGGTCGAGCCGATTATCGCCACGGCACAAACGTCCGTAACCATCGTCACG AACGATCCCGCGGCGACCGCCCACGCGGCCGTAGATGCTGCCGTTGCGGTCGCCAAGGCCGCCGCCGCGCACACCACAGC GATACCGACTCCGCGCGACGTGCTGATGCCGCCTGCGGCACGTACCGCACCGGCCGCAGTGCCGGCCACCATGCCGGTCT CAGCGCCGTCTGCAGCACCAGTGAGGCCCGTAACGTCAGCGCATCCCACGCCGGCCACGGTCTTCGGCCGGCATCCGTCC GCGGATGTTGCCTCGCCGGAACCGGCAGTGCCAGTAGAACCGGTGACGCCATCCGGCCCGACTCCGGCCATGATGCCGCA ACGCCGTACGTCGGACGGTCCGACCACATTCGCTTCACTGGATGCCCAGGAACTGCCGGTCGTACGCGAATATTCGGCAG GCGGTCTGATTTTCGATGACCAGAACCGCGTGGCCATTATCGCCCGTCATTCCCGCTCCGGCCATCTCGAATGGTGCTTG CCGAAGGGGCATATCGAGAAAGGCGAGACCCCGCAGCAGACCGCTGTGCGCGAAGTGCATGAAGAGACCGGCATCCTGGG CGAGGTGATCGATTCCATCGCCACCATCGACTACTGGTTCACCGGCACCACGCAGCGCGTGCATAAGCTGGTCCATCACT TCGCGCTCAAACAGACCGGCGGCGAACTGACGGTGGAAGGAGACCCGGATCATGAGGCGGAAGACGCCCTCTGGGTACGT TTTGAAGATTTGGACGACGTGTTGAGCTATCCCAACGAACGCAAAATCGCGTGGCTCTACGCCAGGAAGAAGAACAGGCA GGCAAACGAGTGA
Upstream 100 bases:
>100_bases ACTTCGAAATCCAATGGGCACCTTCCCGCGTGCGACGTTTTTCTGCCCTACCAGCATACCGTTACCCCACCTGCACACGG GGTTGAGTAAGGTGGAGAAT
Downstream 100 bases:
>100_bases ACCTACCCGGAGTCTTACGACATTGCACACGTCTGGCACACGCACTGGCGGCTGGCGTCGCCGTTGTGGCGATGCTGGCC GCTCCATTGACCGTCTACGC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MITPADLARILGQTPDSADSHTQDHLLYTSETPHHSADSGDSSDVGGTASHSTNQAVHQDEVDAVPTAQHSGVPGTPATP VTPAPSESEISDSASDMPAPKPMMPTPATVFGMHATVTIATTSGTIEGQADGIAGEAGAETIAEVEPIIATAQTSVTIVT NDPAATAHAAVDAAVAVAKAAAAHTTAIPTPRDVLMPPAARTAPAAVPATMPVSAPSAAPVRPVTSAHPTPATVFGRHPS ADVASPEPAVPVEPVTPSGPTPAMMPQRRTSDGPTTFASLDAQELPVVREYSAGGLIFDDQNRVAIIARHSRSGHLEWCL PKGHIEKGETPQQTAVREVHEETGILGEVIDSIATIDYWFTGTTQRVHKLVHHFALKQTGGELTVEGDPDHEAEDALWVR FEDLDDVLSYPNERKIAWLYARKKNRQANE
Sequences:
>Translated_430_residues MITPADLARILGQTPDSADSHTQDHLLYTSETPHHSADSGDSSDVGGTASHSTNQAVHQDEVDAVPTAQHSGVPGTPATP VTPAPSESEISDSASDMPAPKPMMPTPATVFGMHATVTIATTSGTIEGQADGIAGEAGAETIAEVEPIIATAQTSVTIVT NDPAATAHAAVDAAVAVAKAAAAHTTAIPTPRDVLMPPAARTAPAAVPATMPVSAPSAAPVRPVTSAHPTPATVFGRHPS ADVASPEPAVPVEPVTPSGPTPAMMPQRRTSDGPTTFASLDAQELPVVREYSAGGLIFDDQNRVAIIARHSRSGHLEWCL PKGHIEKGETPQQTAVREVHEETGILGEVIDSIATIDYWFTGTTQRVHKLVHHFALKQTGGELTVEGDPDHEAEDALWVR FEDLDDVLSYPNERKIAWLYARKKNRQANE >Mature_430_residues MITPADLARILGQTPDSADSHTQDHLLYTSETPHHSADSGDSSDVGGTASHSTNQAVHQDEVDAVPTAQHSGVPGTPATP VTPAPSESEISDSASDMPAPKPMMPTPATVFGMHATVTIATTSGTIEGQADGIAGEAGAETIAEVEPIIATAQTSVTIVT NDPAATAHAAVDAAVAVAKAAAAHTTAIPTPRDVLMPPAARTAPAAVPATMPVSAPSAAPVRPVTSAHPTPATVFGRHPS ADVASPEPAVPVEPVTPSGPTPAMMPQRRTSDGPTTFASLDAQELPVVREYSAGGLIFDDQNRVAIIARHSRSGHLEWCL PKGHIEKGETPQQTAVREVHEETGILGEVIDSIATIDYWFTGTTQRVHKLVHHFALKQTGGELTVEGDPDHEAEDALWVR FEDLDDVLSYPNERKIAWLYARKKNRQANE
Specific function: May be involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8- oxoguanine, 8-oxo-dGTP) from DNA and the nucleotide pool. In vitro has dATPase rather than 8-oxo-dGTPase activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: NA
Molecular weight: Translated: 45001; Mature: 45001
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITPADLARILGQTPDSADSHTQDHLLYTSETPHHSADSGDSSDVGGTASHSTNQAVHQD CCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH EVDAVPTAQHSGVPGTPATPVTPAPSESEISDSASDMPAPKPMMPTPATVFGMHATVTIA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCHHEEEEEEEEEEE TTSGTIEGQADGIAGEAGAETIAEVEPIIATAQTSVTIVTNDPAATAHAAVDAAVAVAKA EECCEECCCCCCCCCCHHHHHHHHHHHHEEECCCEEEEEECCCCHHHHHHHHHHHHHHHH AAAHTTAIPTPRDVLMPPAARTAPAAVPATMPVSAPSAAPVRPVTSAHPTPATVFGRHPS HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC ADVASPEPAVPVEPVTPSGPTPAMMPQRRTSDGPTTFASLDAQELPVVREYSAGGLIFDD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCEEEEECCCCCEEEC QNRVAIIARHSRSGHLEWCLPKGHIEKGETPQQTAVREVHEETGILGEVIDSIATIDYWF CCCEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHEEEEE TGTTQRVHKLVHHFALKQTGGELTVEGDPDHEAEDALWVRFEDLDDVLSYPNERKIAWLY CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCHHHHHCCCCCCEEEEEE ARKKNRQANE EECCCCCCCC >Mature Secondary Structure MITPADLARILGQTPDSADSHTQDHLLYTSETPHHSADSGDSSDVGGTASHSTNQAVHQD CCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH EVDAVPTAQHSGVPGTPATPVTPAPSESEISDSASDMPAPKPMMPTPATVFGMHATVTIA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCHHEEEEEEEEEEE TTSGTIEGQADGIAGEAGAETIAEVEPIIATAQTSVTIVTNDPAATAHAAVDAAVAVAKA EECCEECCCCCCCCCCHHHHHHHHHHHHEEECCCEEEEEECCCCHHHHHHHHHHHHHHHH AAAHTTAIPTPRDVLMPPAARTAPAAVPATMPVSAPSAAPVRPVTSAHPTPATVFGRHPS HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC ADVASPEPAVPVEPVTPSGPTPAMMPQRRTSDGPTTFASLDAQELPVVREYSAGGLIFDD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCEEEEECCCCCEEEC QNRVAIIARHSRSGHLEWCLPKGHIEKGETPQQTAVREVHEETGILGEVIDSIATIDYWF CCCEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHEEEEE TGTTQRVHKLVHHFALKQTGGELTVEGDPDHEAEDALWVRFEDLDDVLSYPNERKIAWLY CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCHHHHHCCCCCCEEEEEE ARKKNRQANE EECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]