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The map label for this gene is soxS [H]

Identifier: 213693250

GI number: 213693250

Start: 2688431

End: 2689306

Strand: Direct

Name: soxS [H]

Synonym: Blon_2403

Alternate gene names: 213693250

Gene position: 2688431-2689306 (Clockwise)

Preceding gene: 213693249

Following gene: 213693252

Centisome position: 94.91

GC content: 49.89

Gene sequence:

>876_bases
ATGCAGTACGTTAAGGGCACCAATCAGGAACTATTGACCACATCACCGCAGTTCCCTGCCCTGGTCATCGCACATCAGGG
ATTCGACAAAGCCAGGTTGCATTGGCATGAAGGCTTCGAGGTGGTATACGTCCGACGCTGTCGGGCCACAGTGATGAAAG
GCACCCAACGTTCGATGCATCATGCCGGTGATGTAGTACTGATTCCTCCACGCTGCCTGCATAGCATCGAACTTATTCAG
GATCTTCGGCAACCATCAGCTGTACCGCAGGCGCTTTCCGTAACGATCTCGCCCACGGAGTTGCTACCGTCATATCCGTA
TATTACCCAAATCCAACAACAGCTGGATTACGACTACATTGGCGAAAAAGATCATCAACAATTGCTGAAATGCTGCGAAC
AAATGTTTGCGGCACTGATCAGTGGCAAGCAGACACGGTTCCTTGAAGCGAATTCCTGGTTCTACACCATGCTTACCAAT
GTTTTTGACTACGCCAAACCATTGGCTGCAGCGAACCAAGAAGACACCGAGGATGAAACCATACTCCAGGATGGACGAGT
CATTAGACGAATACGCCACTACGTGCAACGTCATTATCGCGAGCCCCTATCCACCGCACAGGTGTCGCAGAAATTCGGAT
ATTCACGAGAGCATTTTTCAAGGATATTCAGCAAATATTCTGGAGTGACATTTAAAGACTACGTAACGCGTGTACGTCTG
CTGGCGGCCTGCGATTTGCTCACCAACACGGATATGCCAATCAATCAAATCGTCCGGGAATCCGGATTCCCCAGTTCTCA
AACCATGCGAGGATCGTTTGACCGCGAATTCGCATGCACGCCCAGCGAATATCGCTCTCGTTCGATGGAAGAATAA

Upstream 100 bases:

>100_bases
GTACCGCCATCACCCACCCCATGACGATAACGTCATGGTTCGCCGATGCAGTAAGGTCCTGATGGCGCACAAACCAACAG
CGACCTAGGTAGGAGGCGAT

Downstream 100 bases:

>100_bases
TCGAGAATCATCTCCATTCTTACGAAGCGCGATATGGACGATACTGCAGTAGGAGTCCAATATGTCGCAGTCCCTCAAAA
ACGAACAAATCCGGTAGTGT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MQYVKGTNQELLTTSPQFPALVIAHQGFDKARLHWHEGFEVVYVRRCRATVMKGTQRSMHHAGDVVLIPPRCLHSIELIQ
DLRQPSAVPQALSVTISPTELLPSYPYITQIQQQLDYDYIGEKDHQQLLKCCEQMFAALISGKQTRFLEANSWFYTMLTN
VFDYAKPLAAANQEDTEDETILQDGRVIRRIRHYVQRHYREPLSTAQVSQKFGYSREHFSRIFSKYSGVTFKDYVTRVRL
LAACDLLTNTDMPINQIVRESGFPSSQTMRGSFDREFACTPSEYRSRSMEE

Sequences:

>Translated_291_residues
MQYVKGTNQELLTTSPQFPALVIAHQGFDKARLHWHEGFEVVYVRRCRATVMKGTQRSMHHAGDVVLIPPRCLHSIELIQ
DLRQPSAVPQALSVTISPTELLPSYPYITQIQQQLDYDYIGEKDHQQLLKCCEQMFAALISGKQTRFLEANSWFYTMLTN
VFDYAKPLAAANQEDTEDETILQDGRVIRRIRHYVQRHYREPLSTAQVSQKFGYSREHFSRIFSKYSGVTFKDYVTRVRL
LAACDLLTNTDMPINQIVRESGFPSSQTMRGSFDREFACTPSEYRSRSMEE
>Mature_291_residues
MQYVKGTNQELLTTSPQFPALVIAHQGFDKARLHWHEGFEVVYVRRCRATVMKGTQRSMHHAGDVVLIPPRCLHSIELIQ
DLRQPSAVPQALSVTISPTELLPSYPYITQIQQQLDYDYIGEKDHQQLLKCCEQMFAALISGKQTRFLEANSWFYTMLTN
VFDYAKPLAAANQEDTEDETILQDGRVIRRIRHYVQRHYREPLSTAQVSQKFGYSREHFSRIFSKYSGVTFKDYVTRVRL
LAACDLLTNTDMPINQIVRESGFPSSQTMRGSFDREFACTPSEYRSRSMEE

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=102, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788725, Length=97, Percent_Identity=32.9896907216495, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33676; Mature: 33676

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYVKGTNQELLTTSPQFPALVIAHQGFDKARLHWHEGFEVVYVRRCRATVMKGTQRSMH
CCCCCCCCCHHEECCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HAGDVVLIPPRCLHSIELIQDLRQPSAVPQALSVTISPTELLPSYPYITQIQQQLDYDYI
HCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHEEEECHHHHCCCCCHHHHHHHHCCCCCC
GEKDHQQLLKCCEQMFAALISGKQTRFLEANSWFYTMLTNVFDYAKPLAAANQEDTEDET
CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ILQDGRVIRRIRHYVQRHYREPLSTAQVSQKFGYSREHFSRIFSKYSGVTFKDYVTRVRL
HHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHH
LAACDLLTNTDMPINQIVRESGFPSSQTMRGSFDREFACTPSEYRSRSMEE
HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MQYVKGTNQELLTTSPQFPALVIAHQGFDKARLHWHEGFEVVYVRRCRATVMKGTQRSMH
CCCCCCCCCHHEECCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HAGDVVLIPPRCLHSIELIQDLRQPSAVPQALSVTISPTELLPSYPYITQIQQQLDYDYI
HCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHEEEECHHHHCCCCCHHHHHHHHCCCCCC
GEKDHQQLLKCCEQMFAALISGKQTRFLEANSWFYTMLTNVFDYAKPLAAANQEDTEDET
CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ILQDGRVIRRIRHYVQRHYREPLSTAQVSQKFGYSREHFSRIFSKYSGVTFKDYVTRVRL
HHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHH
LAACDLLTNTDMPINQIVRESGFPSSQTMRGSFDREFACTPSEYRSRSMEE
HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]