| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692985
Identifier: 213692985
GI number: 213692985
Start: 2357047
End: 2357751
Strand: Direct
Name: 213692985
Synonym: Blon_2132
Alternate gene names: NA
Gene position: 2357047-2357751 (Clockwise)
Preceding gene: 213692984
Following gene: 213692986
Centisome position: 83.21
GC content: 60.85
Gene sequence:
>705_bases ATGAAGGGCTGGCCTGGAGAGCCGGATATGGATTACGACGTGCTGGTCGCGGACGGCGAGGCCGCCGAGAACGCCGGCAA GCCGATCACCGACGTGATCTTCGATTTCGGCAACGTGCTGATTTACTGGGATCCGGCCGCCGTACTCATCCCCCGCTACA GCCAGAAGACCATCGACGAATTCCTCGACAACGACATCTCCGGCTTCTACGATGCCAACGACCTGATGGACGGCGGCACC AGCACCGACGAGGCCATCGCCATCATGCGCCGTGACAAGGGCGATAAGTGGGCGGACATCCTCGACTACTACATCAAGAA CTTCCGCGACTCCCTGACCGGCATCGTGCCGGGCGCGCGCGTGCTGGTCAATGACCTGAAGGCCGCCGGCATCGGCGTGT GGGGCCTGAGCAACTGGGAATCCAGCCTGTTCCACGTGGCCGAGGAACAGTGCGATATTCTGCAGCAGCTTGATGGCAAG CTCGTCTCCGGTTTTGTCAAGCTGCGCAAGCCGCACAAGGAAATCTACGAGGCCGCGTTGAACCAGTTCGGCATCAATGC CGATGGCGCGTTGTTCATCGACGACAAGGCCATGAACATCGTCGGCTCGAATGCGGCCGGCATCCGTGGCGTACGTTTCC AGGATCCGGTCAAGCTGCGTGAACTGCTCATCGCCAATGGCGTGAACATTCCGGCCGTGCAGTGA
Upstream 100 bases:
>100_bases GGCGAGCTTCGCTTCCGAGTAGATCCCAAAGACCTGATCTAATCGTCTTCAACACGTGAAACGATAATTACAGAACGAAC ATCGCTATAAGGAGGACACC
Downstream 100 bases:
>100_bases GCATCGACATTTCAAGGAGGACCATGCTCAAACTCGTATTCGCCGGCACCCCCGACGTGGCGGTGCCCTCGCTCAAGGCC TTTGCCACCGACCCACGCTT
Product: HAD-superfamily hydrolase, subfamily IA, variant 3
Products: NA
Alternate protein names: HAD-Superfamily Hydrolase; HAD Superfamily Hydrolase; Hydrolase; Alpha Beta Hydrolase; Haloacid Dehalogenase-Like Hydrolase; 2-Haloacid Dehalogenase; HAD Family Phosphatase; Hydrolase Haloacid Dehalogenase-Like Family Protein; HAD Hydrolase Family IA; Haloacid Dehalogenase Superfamily Protein; Hydrolase Protein; Haloacid Dehalogenase-Like Family Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Hydrolase Protein Haloacid Dehalogenase-Like Family; Haloacid Dehalogenase-Like Hydrolase Protein; HAD Hydrolase Superfamily Protein
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MKGWPGEPDMDYDVLVADGEAAENAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDEFLDNDISGFYDANDLMDGGT STDEAIAIMRRDKGDKWADILDYYIKNFRDSLTGIVPGARVLVNDLKAAGIGVWGLSNWESSLFHVAEEQCDILQQLDGK LVSGFVKLRKPHKEIYEAALNQFGINADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPAVQ
Sequences:
>Translated_234_residues MKGWPGEPDMDYDVLVADGEAAENAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDEFLDNDISGFYDANDLMDGGT STDEAIAIMRRDKGDKWADILDYYIKNFRDSLTGIVPGARVLVNDLKAAGIGVWGLSNWESSLFHVAEEQCDILQQLDGK LVSGFVKLRKPHKEIYEAALNQFGINADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPAVQ >Mature_234_residues MKGWPGEPDMDYDVLVADGEAAENAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDEFLDNDISGFYDANDLMDGGT STDEAIAIMRRDKGDKWADILDYYIKNFRDSLTGIVPGARVLVNDLKAAGIGVWGLSNWESSLFHVAEEQCDILQQLDGK LVSGFVKLRKPHKEIYEAALNQFGINADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPAVQ
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25726; Mature: 25726
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGWPGEPDMDYDVLVADGEAAENAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDE CCCCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHCCEEEEECCCEEEECCCCHHHHHH FLDNDISGFYDANDLMDGGTSTDEAIAIMRRDKGDKWADILDYYIKNFRDSLTGIVPGAR HHCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH VLVNDLKAAGIGVWGLSNWESSLFHVAEEQCDILQQLDGKLVSGFVKLRKPHKEIYEAAL HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH NQFGINADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPAVQ HHCCCCCCCEEEECCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKGWPGEPDMDYDVLVADGEAAENAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDE CCCCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHCCEEEEECCCEEEECCCCHHHHHH FLDNDISGFYDANDLMDGGTSTDEAIAIMRRDKGDKWADILDYYIKNFRDSLTGIVPGAR HHCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH VLVNDLKAAGIGVWGLSNWESSLFHVAEEQCDILQQLDGKLVSGFVKLRKPHKEIYEAAL HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH NQFGINADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPAVQ HHCCCCCCCEEEECCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA