| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is epsK [H]
Identifier: 213692953
GI number: 213692953
Start: 2319093
End: 2320628
Strand: Reverse
Name: epsK [H]
Synonym: Blon_2099
Alternate gene names: 213692953
Gene position: 2320628-2319093 (Counterclockwise)
Preceding gene: 213692954
Following gene: 213692952
Centisome position: 81.92
GC content: 51.56
Gene sequence:
>1536_bases ATGGGAGATAAGAAACAACTGCTTGTGAACATGGTCGCAAGTTTGGTGAATTTCACGGTTTCCGTTGGAATCGGTCTGGT GCTTACGCCATATATCGTGCGTAGCATCGGCGCTGAAGCCTATGGGTTCGTCGGATTGGCGAACACGTTCGTGAGCTATG CGCAGCTGCTTACCATCGCATTGAATTCGGTGGCCGGGCGCTTCATCACGGTCGCATACCATGAAGGCGATGATTCCAAG GCGAACGGGTATTATTCGTCTACGCTTGCGGCAAACGGCGTCATGGTCGCCATACTGGTGGTCGTCGCGGTTCCGGTGGT GACGTTCCTTGACAAGCTGGTGAACATCTCTCCACATCTTGTGGGAGACGTGAAGGCTCTGTTCGTCTTCATATTCCTGA ATTTCATGCTTTCGACCATCGCCACGGTGTATTCCGTCGCCACATTCGTGAAGAACAAGCTGTATCTGAGCAGTATCGCG AATCTCGCGTTTTCCTTGGTACGTGTGGTGGCCATGGTCGCGCTTTTCGGGATTCTGCCGCCAAAGGTCTACTACGTGGG CTTGGCCGTATGCTTGGCGACGGCGGTGATGACGCTGATGAATCGCTCGTATACGCGCAGATTACTTCCCGACATTTCCT TCGACAGGAAATCGGTATCGTGGACGAGCATTCGTGAGATGCTTTCCGCCGGCGTGTGGAACGTGGTCACGAAACTCCAG CAGATTATGATGTTCGGATTGCAGTTGCTGGTGGCGAACCTGATGATCAGCCCGTATCTTATGGGTATGCTCTCCATCGC CCAGACCGTTCCGAACCAGATCAGCGGACTAATGTGGACTGTGTCGAGCCTGTTTTATCCTGAACAGACGAAATACTATG CGCAGGGCAAGCATAAGGAACTCATCGAAGACCTCAAATCGGGCATGAAGGTGACCGGTTTCTTCACGAATATTATTTTT GTGGCGATGCTTGTTGCAGGATATGATTTCATGAGTTTGTGGCAGCATGGTCAGGATACGGAGCTGTTGTATCAGTTGCT TACCCTTACCATGCTGGGCTTGCTGATTTCCGGTGTCGCTACGACGTTGCAGAATCTGCCGCTGATCGTCAACCGTTTGA AGAAGTATTCTATCGGATGGCTCGTCTACAGTGCGATATCCATGGTCGTGCTGATTGCCTTTATCGAGGTTCTTCCGAAG TGGGGCGTTTTCCTCGTGGCGGCGATTCCGCCTCTGTTTGAGATTTTGGCAAATGTGACATTCGTGCCCGTTTATGCCTC CAGATGCTTGGGCATCGGGAAATTCGAGTTCTATCCCATCTATATTCGGTACTTCGCCTCCACAGCGGTGGCTGCCGCCG TCTGCTGGGGAATCAGGCATGTGTTCGCGCTGGTCGCCAATGGCTGGGTCTCGTTGATTCTGACGTGTTGCCTGTATGCA TTGGTCACAATGCTTTTGGATGTAGTGTTGTTGCTCGGAAAGAAAGAACGTTCCATGTTGGTAGGTATGCTGAAGAAGAA GCTACATATCAACTAG
Upstream 100 bases:
>100_bases AATCGATGTCGCAGGCGGCGTTGCTGCATTCGCGGAAATTTACGGAAGAATCCTTTTATCGGGAATTCGTGGAGAAGATA GGCGAGTAATAGGCTGAATT
Downstream 100 bases:
>100_bases CGAGGTGGTGGCGTTTTCTTGGACTCTCCGACCGGGAGGAGACCCCCTAGGGTGGTATACAGCAAGGAACAACGCGACCG CGTCCACAGCTCTGCGTTTC
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 511; Mature: 510
Protein sequence:
>511_residues MGDKKQLLVNMVASLVNFTVSVGIGLVLTPYIVRSIGAEAYGFVGLANTFVSYAQLLTIALNSVAGRFITVAYHEGDDSK ANGYYSSTLAANGVMVAILVVVAVPVVTFLDKLVNISPHLVGDVKALFVFIFLNFMLSTIATVYSVATFVKNKLYLSSIA NLAFSLVRVVAMVALFGILPPKVYYVGLAVCLATAVMTLMNRSYTRRLLPDISFDRKSVSWTSIREMLSAGVWNVVTKLQ QIMMFGLQLLVANLMISPYLMGMLSIAQTVPNQISGLMWTVSSLFYPEQTKYYAQGKHKELIEDLKSGMKVTGFFTNIIF VAMLVAGYDFMSLWQHGQDTELLYQLLTLTMLGLLISGVATTLQNLPLIVNRLKKYSIGWLVYSAISMVVLIAFIEVLPK WGVFLVAAIPPLFEILANVTFVPVYASRCLGIGKFEFYPIYIRYFASTAVAAAVCWGIRHVFALVANGWVSLILTCCLYA LVTMLLDVVLLLGKKERSMLVGMLKKKLHIN
Sequences:
>Translated_511_residues MGDKKQLLVNMVASLVNFTVSVGIGLVLTPYIVRSIGAEAYGFVGLANTFVSYAQLLTIALNSVAGRFITVAYHEGDDSK ANGYYSSTLAANGVMVAILVVVAVPVVTFLDKLVNISPHLVGDVKALFVFIFLNFMLSTIATVYSVATFVKNKLYLSSIA NLAFSLVRVVAMVALFGILPPKVYYVGLAVCLATAVMTLMNRSYTRRLLPDISFDRKSVSWTSIREMLSAGVWNVVTKLQ QIMMFGLQLLVANLMISPYLMGMLSIAQTVPNQISGLMWTVSSLFYPEQTKYYAQGKHKELIEDLKSGMKVTGFFTNIIF VAMLVAGYDFMSLWQHGQDTELLYQLLTLTMLGLLISGVATTLQNLPLIVNRLKKYSIGWLVYSAISMVVLIAFIEVLPK WGVFLVAAIPPLFEILANVTFVPVYASRCLGIGKFEFYPIYIRYFASTAVAAAVCWGIRHVFALVANGWVSLILTCCLYA LVTMLLDVVLLLGKKERSMLVGMLKKKLHIN >Mature_510_residues GDKKQLLVNMVASLVNFTVSVGIGLVLTPYIVRSIGAEAYGFVGLANTFVSYAQLLTIALNSVAGRFITVAYHEGDDSKA NGYYSSTLAANGVMVAILVVVAVPVVTFLDKLVNISPHLVGDVKALFVFIFLNFMLSTIATVYSVATFVKNKLYLSSIAN LAFSLVRVVAMVALFGILPPKVYYVGLAVCLATAVMTLMNRSYTRRLLPDISFDRKSVSWTSIREMLSAGVWNVVTKLQQ IMMFGLQLLVANLMISPYLMGMLSIAQTVPNQISGLMWTVSSLFYPEQTKYYAQGKHKELIEDLKSGMKVTGFFTNIIFV AMLVAGYDFMSLWQHGQDTELLYQLLTLTMLGLLISGVATTLQNLPLIVNRLKKYSIGWLVYSAISMVVLIAFIEVLPKW GVFLVAAIPPLFEILANVTFVPVYASRCLGIGKFEFYPIYIRYFASTAVAAAVCWGIRHVFALVANGWVSLILTCCLYAL VTMLLDVVLLLGKKERSMLVGMLKKKLHIN
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002797 [H]
Pfam domain/function: PF01943 Polysacc_synt [H]
EC number: NA
Molecular weight: Translated: 56319; Mature: 56188
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDKKQLLVNMVASLVNFTVSVGIGLVLTPYIVRSIGAEAYGFVGLANTFVSYAQLLTIA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH LNSVAGRFITVAYHEGDDSKANGYYSSTLAANGVMVAILVVVAVPVVTFLDKLVNISPHL HHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH VGDVKALFVFIFLNFMLSTIATVYSVATFVKNKLYLSSIANLAFSLVRVVAMVALFGILP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PKVYYVGLAVCLATAVMTLMNRSYTRRLLPDISFDRKSVSWTSIREMLSAGVWNVVTKLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH QIMMFGLQLLVANLMISPYLMGMLSIAQTVPNQISGLMWTVSSLFYPEQTKYYAQGKHKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHH LIEDLKSGMKVTGFFTNIIFVAMLVAGYDFMSLWQHGQDTELLYQLLTLTMLGLLISGVA HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TTLQNLPLIVNRLKKYSIGWLVYSAISMVVLIAFIEVLPKWGVFLVAAIPPLFEILANVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH FVPVYASRCLGIGKFEFYPIYIRYFASTAVAAAVCWGIRHVFALVANGWVSLILTCCLYA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVTMLLDVVLLLGKKERSMLVGMLKKKLHIN HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure GDKKQLLVNMVASLVNFTVSVGIGLVLTPYIVRSIGAEAYGFVGLANTFVSYAQLLTIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH LNSVAGRFITVAYHEGDDSKANGYYSSTLAANGVMVAILVVVAVPVVTFLDKLVNISPHL HHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH VGDVKALFVFIFLNFMLSTIATVYSVATFVKNKLYLSSIANLAFSLVRVVAMVALFGILP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PKVYYVGLAVCLATAVMTLMNRSYTRRLLPDISFDRKSVSWTSIREMLSAGVWNVVTKLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH QIMMFGLQLLVANLMISPYLMGMLSIAQTVPNQISGLMWTVSSLFYPEQTKYYAQGKHKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHH LIEDLKSGMKVTGFFTNIIFVAMLVAGYDFMSLWQHGQDTELLYQLLTLTMLGLLISGVA HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TTLQNLPLIVNRLKKYSIGWLVYSAISMVVLIAFIEVLPKWGVFLVAAIPPLFEILANVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH FVPVYASRCLGIGKFEFYPIYIRYFASTAVAAAVCWGIRHVFALVANGWVSLILTCCLYA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVTMLLDVVLLLGKKERSMLVGMLKKKLHIN HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]