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The map label for this gene is yocS [H]

Identifier: 213692796

GI number: 213692796

Start: 2111731

End: 2112792

Strand: Reverse

Name: yocS [H]

Synonym: Blon_1934

Alternate gene names: 213692796

Gene position: 2112792-2111731 (Counterclockwise)

Preceding gene: 213692798

Following gene: 213692792

Centisome position: 74.58

GC content: 62.71

Gene sequence:

>1062_bases
ATGGAAAAGGTTAAAGCCTTTGCAGATTGGCTGACCAAGTGGTTTACGGTCATCGTCATCGTCTGGGCCGTCTTCAACTA
CTTCGTGCCGGCCGCCAGCCTGTGGGGCAAGGCGTACACCGGCTACATGCTGGGCATCGTGCTGTTCGGCATGGGTCTGA
CCCTGACGCTGGACGATTTCAAGCGCATCCTCACCCAGCCGATGATGGTCATCGTCGGCACGGTGGCCCATTTCGTCATC
ATGCCGCTCGTCGCCGTGGCCCTGTGCGCGGTCTTCCACCTGTCCGGCCCGCTGGCCGTGGGCGTGATTCTCGTCGGCTG
CTGCCCGTCCGGCACCTCCTCCAACGTGATGAGCTACCTGTCCCGTGGTGACGTGGCCCTCGATGTCTCCATCGGCATCC
TCTCCACCCTGTGCGCCCCGTTCATGATTCCGCTGCTGATGCAGCTGCTGGCCTCCCAGTATGTGAGCGTGCCGGTCGAA
TCCCTGTTCCTCAATGCCGTCAAGGTGGTGCTTTTCCCGATTGCCCTCGGCGTGATCTGCCACATGGTCTTCGGCAAGAA
GATCGAGAAGGTCACCGTGGCCCTGCCGATCGTGTCTCAGGTGGCCATCCTGCTGATCATCGGCGTGGTCGTCGCCGCCA
ACGGTCCGAAGCTGTTCGTGGCCAGCTCCCTGATGGCCATCCCGGTGGTCATCCTGCATAATCTGTGCGGCTACTCGCTG
GGCTTCGGCTTCTCGAAGCTGATGTACAAGATCTACCCGAAGGGCTTCCGCTACGCACAGCAGAAAGCCATCACCTTCGA
GGTCGGCATGCAGGACTCCGCCCTGGGCGCCACGCTGGCCCTGACCTCCTTCGCGTCCAACCCGCTCGCCGCCGTGCCGT
CCACGTTCTTCTCCGTGTGGCACAACATTTCCGGCTCCATCCTGTCCAGCTGGTGGCGCAACCATGATGACCGGCATGAG
ATTCATTGGGATTCCGACAACGGCGAGAAGGGCTCCGCGGCGAACGTCGTCGACGCGGCCCGTCCGTCCGATGCCGCCAA
GACCGCCCCGTCCGTCGCCTGA

Upstream 100 bases:

>100_bases
TACGTGAGCGTTCACAATGTGAGCATTATGTTTCATATCAACCGCGACCCGCCTAGTTTCATGCGATGTTACCTACACCG
AACAAGGGAAGAGAAACACC

Downstream 100 bases:

>100_bases
GAAGGCCGTCGCCCGGCGCGGCGAAGTCGGCGGGCCGGGCGTTCGCGGCGTGTCCGCCGGTAGGGTGGTCTCGTGTTTAT
GTTCAATGTTTTTTCGGCAA

Product: Bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MEKVKAFADWLTKWFTVIVIVWAVFNYFVPAASLWGKAYTGYMLGIVLFGMGLTLTLDDFKRILTQPMMVIVGTVAHFVI
MPLVAVALCAVFHLSGPLAVGVILVGCCPSGTSSNVMSYLSRGDVALDVSIGILSTLCAPFMIPLLMQLLASQYVSVPVE
SLFLNAVKVVLFPIALGVICHMVFGKKIEKVTVALPIVSQVAILLIIGVVVAANGPKLFVASSLMAIPVVILHNLCGYSL
GFGFSKLMYKIYPKGFRYAQQKAITFEVGMQDSALGATLALTSFASNPLAAVPSTFFSVWHNISGSILSSWWRNHDDRHE
IHWDSDNGEKGSAANVVDAARPSDAAKTAPSVA

Sequences:

>Translated_353_residues
MEKVKAFADWLTKWFTVIVIVWAVFNYFVPAASLWGKAYTGYMLGIVLFGMGLTLTLDDFKRILTQPMMVIVGTVAHFVI
MPLVAVALCAVFHLSGPLAVGVILVGCCPSGTSSNVMSYLSRGDVALDVSIGILSTLCAPFMIPLLMQLLASQYVSVPVE
SLFLNAVKVVLFPIALGVICHMVFGKKIEKVTVALPIVSQVAILLIIGVVVAANGPKLFVASSLMAIPVVILHNLCGYSL
GFGFSKLMYKIYPKGFRYAQQKAITFEVGMQDSALGATLALTSFASNPLAAVPSTFFSVWHNISGSILSSWWRNHDDRHE
IHWDSDNGEKGSAANVVDAARPSDAAKTAPSVA
>Mature_353_residues
MEKVKAFADWLTKWFTVIVIVWAVFNYFVPAASLWGKAYTGYMLGIVLFGMGLTLTLDDFKRILTQPMMVIVGTVAHFVI
MPLVAVALCAVFHLSGPLAVGVILVGCCPSGTSSNVMSYLSRGDVALDVSIGILSTLCAPFMIPLLMQLLASQYVSVPVE
SLFLNAVKVVLFPIALGVICHMVFGKKIEKVTVALPIVSQVAILLIIGVVVAANGPKLFVASSLMAIPVVILHNLCGYSL
GFGFSKLMYKIYPKGFRYAQQKAITFEVGMQDSALGATLALTSFASNPLAAVPSTFFSVWHNISGSILSSWWRNHDDRHE
IHWDSDNGEKGSAANVVDAARPSDAAKTAPSVA

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=308, Percent_Identity=28.2467532467532, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI37537552, Length=312, Percent_Identity=22.7564102564103, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI4506971, Length=303, Percent_Identity=26.4026402640264, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI24308414, Length=245, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 37921; Mature: 37921

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCHHCCCCCCC
>Mature Secondary Structure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HCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]