Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 213692658

GI number: 213692658

Start: 1963816

End: 1964400

Strand: Direct

Name: ssb [H]

Synonym: Blon_1791

Alternate gene names: 213692658

Gene position: 1963816-1964400 (Clockwise)

Preceding gene: 213692657

Following gene: 213692659

Centisome position: 69.33

GC content: 64.96

Gene sequence:

>585_bases
ATGGCCGGAGAGACGACGCTCACCATTGTGGGCAACCTGACGGCGGACCCGGAAATCCGCACGATCGGCACCGGGGCGAC
GGTCGCGAATTTCACGGTCGCTTCCACGCCGCACGTATGGAACCGTCAGACGAACCAGTACGAGGACGGTCAAACCCTGT
TCATGTGCTGCAGCGCATGGCGCGACCTCGCCGCCCACATCGCCCAATCGTTGAAGAAGGGCGTGCGCGTGATCGTGACG
GGCCGTCTGTTACAGCGCTCCTACCAGGCGCAGGACGGGGTGAACCGCACGATCGTGGAACTGCAGGTGGACGAGATAGG
CCCGAGCCTGCGTTACGCGGTCGCGGCAGTGGCCAAGCAGTCCAAGCCCAACGGCTTCCAAAACAACCAACAGGGTCAGC
AGTCGTATTCGGGTGGCTCCACGTACGGCAATCCGCAACAGTCGGGCTGGCAGCAGGCCGCGCCGCAACCAGCCGCCAAC
GACCCGTTCGGCCAACCGCAACAACCGCAATCGCAGGAGCAGGATCCGTGGGCCTCCAGCCAGCCCGCTCCTCCGGCCGA
TGGGCCGGACGACCCGGAATTCTAA

Upstream 100 bases:

>100_bases
TGGTACCGAAGCCGGGTGTCATCACGGTCGACCGGCCGTCGCGCAGGGTCTCGGCGGTCGTGGAATACGCAGACAAGAAA
CATTTCAGAAGGAGTAGGTG

Downstream 100 bases:

>100_bases
AGGAGGATCCTCATGTCGATATCCATAGTGGACATTCCCGTCTCCCAACTGGAGCCGAACCCGCATAATCCGCGCAGGGA
CGTGGGCGACGTAAGGGAGC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAGETTLTIVGNLTADPEIRTIGTGATVANFTVASTPHVWNRQTNQYEDGQTLFMCCSAWRDLAAHIAQSLKKGVRVIVT
GRLLQRSYQAQDGVNRTIVELQVDEIGPSLRYAVAAVAKQSKPNGFQNNQQGQQSYSGGSTYGNPQQSGWQQAAPQPAAN
DPFGQPQQPQSQEQDPWASSQPAPPADGPDDPEF

Sequences:

>Translated_194_residues
MAGETTLTIVGNLTADPEIRTIGTGATVANFTVASTPHVWNRQTNQYEDGQTLFMCCSAWRDLAAHIAQSLKKGVRVIVT
GRLLQRSYQAQDGVNRTIVELQVDEIGPSLRYAVAAVAKQSKPNGFQNNQQGQQSYSGGSTYGNPQQSGWQQAAPQPAAN
DPFGQPQQPQSQEQDPWASSQPAPPADGPDDPEF
>Mature_193_residues
AGETTLTIVGNLTADPEIRTIGTGATVANFTVASTPHVWNRQTNQYEDGQTLFMCCSAWRDLAAHIAQSLKKGVRVIVTG
RLLQRSYQAQDGVNRTIVELQVDEIGPSLRYAVAAVAKQSKPNGFQNNQQGQQSYSGGSTYGNPQQSGWQQAAPQPAAND
PFGQPQQPQSQEQDPWASSQPAPPADGPDDPEF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 20911; Mature: 20780

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGETTLTIVGNLTADPEIRTIGTGATVANFTVASTPHVWNRQTNQYEDGQTLFMCCSAW
CCCCEEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHH
RDLAAHIAQSLKKGVRVIVTGRLLQRSYQAQDGVNRTIVELQVDEIGPSLRYAVAAVAKQ
HHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHHH
SKPNGFQNNQQGQQSYSGGSTYGNPQQSGWQQAAPQPAANDPFGQPQQPQSQEQDPWASS
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QPAPPADGPDDPEF
CCCCCCCCCCCCCC
>Mature Secondary Structure 
AGETTLTIVGNLTADPEIRTIGTGATVANFTVASTPHVWNRQTNQYEDGQTLFMCCSAW
CCCEEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHH
RDLAAHIAQSLKKGVRVIVTGRLLQRSYQAQDGVNRTIVELQVDEIGPSLRYAVAAVAKQ
HHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHHH
SKPNGFQNNQQGQQSYSGGSTYGNPQQSGWQQAAPQPAANDPFGQPQQPQSQEQDPWASS
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QPAPPADGPDDPEF
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]