| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is troB [H]
Identifier: 213692624
GI number: 213692624
Start: 1931157
End: 1932047
Strand: Direct
Name: troB [H]
Synonym: Blon_1757
Alternate gene names: 213692624
Gene position: 1931157-1932047 (Clockwise)
Preceding gene: 213692623
Following gene: 213692625
Centisome position: 68.17
GC content: 60.04
Gene sequence:
>891_bases ATGAGTGAAACTTCCGATTGCATCGTGTTCAGCGATGCCGCCATCAAGCGTGGTGACCATATCATCTGGCAGCATGGCAC CTTTGCCATTCCCACCGGTTCGGTCACGGCCATCGTCGGCACCAACGGCACCGGCAAAACCACGATGATGAGGGCCGAAC TGGGACTTTTGCCGCTTTGCCATGGCAGCCTGACCGTACTGGGCAAGCCCGCAGGCGAGATGAACAAACGCATCGGATAT GTGCCGCAGAGCTATGTGGCGAATGTCGATTCCAATCTCACCGCCGAACAATCCGTGTTGCTGGGTCTGACCGGCACCCG ATTCGGCATCCACCCCATCACCAAGGCCCAGAAAGCCAAAGCGCTCAAGGCGATGGAGTTCACCGGCATCGCCGACAAGG CGCAGTACCGTCTGTCCGAACTGTCCGGCGGTTTGCGCCAGCGTGTGGCCATCGCCCAGGCGTTGGTGTGCGATCCACAA CTGCTGATGCTTGACGAGCCGTTGGCCAACCTCGATCTGGCCAGTCAACGCGCCACCGTACACGTGCTGGCCAAGCTGAA CCGTGAACTGAACATGACCATCCAGGTGGTTGCGCACGATCTCAATATGCTCTTGCCGATTCTGACCGGTGCCGTCTACT TGCTCGACGGGCACCCGCACTACGCCGATATGCACAAAGTGCTCGACTCCGACCTACTCACCCACCTCTACGGCACACAG GTGCAGGTGGTCACCACTCCGCAGGGTGACATGTTCGTGACCCCGACGCCGGATGAGCCCCAGGACCAGCCGCAGGATAT GCACACGGCAGCCGAAGTGGCGCAATTGCACCATCACGAGCACGGCAACGCCACCAATGGCAGTGCCGCCAACAGCGCCG AGAATCGATAA
Upstream 100 bases:
>100_bases ACCATTGTCGAGATGGCCGCACAACCCTTTTCTTTGGTTGTCACCATCCGTACACGATATTGAGAACGATTGTCAGCATC GTTTGCCACAATCGGGCGTT
Downstream 100 bases:
>100_bases CATCAAGCTAGCCGATCCACAGCCCGTCAACGGGCTGCAGCTCAGGCATGGAGAAAATACAGGGACATGAGCACCATCAA CTTTTCGTATGATCCCGAAT
Product: ABC transporter
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSETSDCIVFSDAAIKRGDHIIWQHGTFAIPTGSVTAIVGTNGTGKTTMMRAELGLLPLCHGSLTVLGKPAGEMNKRIGY VPQSYVANVDSNLTAEQSVLLGLTGTRFGIHPITKAQKAKALKAMEFTGIADKAQYRLSELSGGLRQRVAIAQALVCDPQ LLMLDEPLANLDLASQRATVHVLAKLNRELNMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQ VQVVTTPQGDMFVTPTPDEPQDQPQDMHTAAEVAQLHHHEHGNATNGSAANSAENR
Sequences:
>Translated_296_residues MSETSDCIVFSDAAIKRGDHIIWQHGTFAIPTGSVTAIVGTNGTGKTTMMRAELGLLPLCHGSLTVLGKPAGEMNKRIGY VPQSYVANVDSNLTAEQSVLLGLTGTRFGIHPITKAQKAKALKAMEFTGIADKAQYRLSELSGGLRQRVAIAQALVCDPQ LLMLDEPLANLDLASQRATVHVLAKLNRELNMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQ VQVVTTPQGDMFVTPTPDEPQDQPQDMHTAAEVAQLHHHEHGNATNGSAANSAENR >Mature_295_residues SETSDCIVFSDAAIKRGDHIIWQHGTFAIPTGSVTAIVGTNGTGKTTMMRAELGLLPLCHGSLTVLGKPAGEMNKRIGYV PQSYVANVDSNLTAEQSVLLGLTGTRFGIHPITKAQKAKALKAMEFTGIADKAQYRLSELSGGLRQRVAIAQALVCDPQL LMLDEPLANLDLASQRATVHVLAKLNRELNMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQV QVVTTPQGDMFVTPTPDEPQDQPQDMHTAAEVAQLHHHEHGNATNGSAANSAENR
Specific function: Part of an ATP-driven transport system TroABCD for zinc [H]
COG id: COG1121
COG function: function code P; ABC-type Mn/Zn transport systems, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27262624, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI27262626, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI116734710, Length=265, Percent_Identity=24.9056603773585, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1786803, Length=249, Percent_Identity=30.5220883534137, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=31.1111111111111, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788761, Length=197, Percent_Identity=32.48730964467, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787712, Length=178, Percent_Identity=35.3932584269663, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081834, Length=190, Percent_Identity=33.1578947368421, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786345, Length=234, Percent_Identity=26.0683760683761, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI48994943, Length=199, Percent_Identity=28.1407035175879, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081782, Length=194, Percent_Identity=29.8969072164948, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=25.2, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87082267, Length=178, Percent_Identity=33.1460674157303, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787500, Length=224, Percent_Identity=29.0178571428571, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788506, Length=207, Percent_Identity=29.4685990338164, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=27.536231884058, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=28.4403669724771, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789891, Length=193, Percent_Identity=29.0155440414508, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1786872, Length=186, Percent_Identity=30.6451612903226, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786563, Length=198, Percent_Identity=30.3030303030303, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787370, Length=194, Percent_Identity=31.4432989690722, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994883, Length=196, Percent_Identity=29.5918367346939, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787089, Length=210, Percent_Identity=30.4761904761905, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=27.6315789473684, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786703, Length=185, Percent_Identity=31.3513513513514, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789032, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790467, Length=188, Percent_Identity=31.3829787234043, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789751, Length=222, Percent_Identity=28.8288288288288, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790739, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788450, Length=177, Percent_Identity=28.8135593220339, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=209, Percent_Identity=31.5789473684211, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787105, Length=186, Percent_Identity=31.7204301075269, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1789873, Length=202, Percent_Identity=26.7326732673267, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786654, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI2367384, Length=210, Percent_Identity=30.952380952381, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786319, Length=166, Percent_Identity=30.1204819277108, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787759, Length=207, Percent_Identity=29.4685990338164, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787164, Length=188, Percent_Identity=30.3191489361702, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI87081791, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI145693107, Length=186, Percent_Identity=26.3440860215054, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789963, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI48994997, Length=186, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1788225, Length=221, Percent_Identity=26.2443438914027, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=180, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=26.7676767676768, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1789864, Length=198, Percent_Identity=24.7474747474747, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI48995001, Length=181, Percent_Identity=26.5193370165746, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI25146777, Length=201, Percent_Identity=30.3482587064677, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115534520, Length=226, Percent_Identity=27.8761061946903, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI212646699, Length=245, Percent_Identity=27.7551020408163, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559834, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71992285, Length=189, Percent_Identity=31.2169312169312, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193211017, Length=201, Percent_Identity=31.3432835820896, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71996809, Length=201, Percent_Identity=31.3432835820896, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193211015, Length=201, Percent_Identity=31.3432835820896, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193208177, Length=215, Percent_Identity=29.3023255813954, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569143, Length=194, Percent_Identity=31.9587628865979, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533592, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI45552355, Length=160, Percent_Identity=31.25, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI45552357, Length=160, Percent_Identity=31.25, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI45552363, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI45552359, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45550972, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552805, Length=201, Percent_Identity=30.3482587064677, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552345, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552351, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552343, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552339, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552335, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI45552361, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI45552353, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI45552341, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24583969, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI45552337, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI45552347, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI45552349, Length=160, Percent_Identity=31.25, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357907, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17647219, Length=201, Percent_Identity=30.3482587064677, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582014, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24582012, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI28574150, Length=172, Percent_Identity=28.4883720930233, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007328, Length=172, Percent_Identity=28.4883720930233, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24650853, Length=175, Percent_Identity=27.4285714285714, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650855, Length=175, Percent_Identity=27.4285714285714, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI281362751, Length=175, Percent_Identity=27.4285714285714, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 31890; Mature: 31759
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETSDCIVFSDAAIKRGDHIIWQHGTFAIPTGSVTAIVGTNGTGKTTMMRAELGLLPLC CCCCCCEEEEECHHHCCCCEEEEECCEEEECCCCEEEEEECCCCCCEEEEEEHHCEEEEC HGSLTVLGKPAGEMNKRIGYVPQSYVANVDSNLTAEQSVLLGLTGTRFGIHPITKAQKAK CCCEEEEECCCHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH ALKAMEFTGIADKAQYRLSELSGGLRQRVAIAQALVCDPQLLMLDEPLANLDLASQRATV HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHH HVLAKLNRELNMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQ HHHHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCE VQVVTTPQGDMFVTPTPDEPQDQPQDMHTAAEVAQLHHHEHGNATNGSAANSAENR EEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SETSDCIVFSDAAIKRGDHIIWQHGTFAIPTGSVTAIVGTNGTGKTTMMRAELGLLPLC CCCCCEEEEECHHHCCCCEEEEECCEEEECCCCEEEEEECCCCCCEEEEEEHHCEEEEC HGSLTVLGKPAGEMNKRIGYVPQSYVANVDSNLTAEQSVLLGLTGTRFGIHPITKAQKAK CCCEEEEECCCHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH ALKAMEFTGIADKAQYRLSELSGGLRQRVAIAQALVCDPQLLMLDEPLANLDLASQRATV HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHH HVLAKLNRELNMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQ HHHHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCE VQVVTTPQGDMFVTPTPDEPQDQPQDMHTAAEVAQLHHHEHGNATNGSAANSAENR EEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9332349; 9665876 [H]