| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692590
Identifier: 213692590
GI number: 213692590
Start: 1886734
End: 1889211
Strand: Reverse
Name: 213692590
Synonym: Blon_1722
Alternate gene names: NA
Gene position: 1889211-1886734 (Counterclockwise)
Preceding gene: 213692599
Following gene: 213692589
Centisome position: 66.69
GC content: 62.71
Gene sequence:
>2478_bases ATGACGAGTCCTGTTATTGGCACCCCTTGGAAGAAGCTCAGCGCTCCGGTTTCCGAGGAAGCCCTCGAAGGCGTTGACAA GTACTGGCGCGTTGCCAACTACCTTTCCATCGGCCAGATTTATCTGCGTTCCAACCCGCTGATGAAGGAGCCCTTCACCC GCGAAGATGTGAAGCATCGTCTGGTGGGCCACTGGGGCACTACCCCTGGCCTGAACTTCCTCATCGGCCACATCAACCGT TTCATTGCTGACCACGGCCAGAACACCGTGATCATCATGGGCCCGGGCCACGGTGGCCCGGCCGGTACCTCCCAGTCCTA CCTGGACGGCACCTACACCGAGACCTTCCCGAAGATCACCAAGGACGAAGCTGGTCTGCAGAAGTTCTTCCGTCAGTTCT CTTACCCGGGCGGTATTCCGTCCCACTTCGCTCCGGAGACCCCGGGCTCCATCCACGAGGGTGGTGAGCTGGGTTACGCT CTGTCCCACGCTTACGGCGCCATCATGGACAACCCGAGCCTGTTCGTCCCGGCCATCGTCGGCGACGGCGAGGCTGAGAC CGGCCCGCTGGCTACCGGTTGGCAGTCCAACAAGCTCGTGAACCCGCGCACCGACGGTATCGTGCTGCCGATCCTGCACC TCAACGGCTACAAGATCGCCAACCCGACCATCCTGTCCCGCATCTCCGACGAAGAGCTCCACGAGTTCTTCCACGGCATG GGTTACGAGCCCTACGAGTTCGTCGCTGGCTTCGATGATGAGGACCACATGTCCATCCACCGCCGCTTCGCCGAGCTGTG GGAGACCATCTGGGACGAGATCTGCGACATCAAGGCCACCGCTCAGACCGACAACGTGCACCGTCCGTTCTACCCGATGC TGATCTTCCGCACCCCGAAGGGCTGGACCTGCCCGAAGTACATCGACGGCAAGAAGACCGAAGGCTCCTGGCGTTCCCAC CAGGTGCCGCTGGCCTCCGCCCGCGACACCGAGGCCCACTTCGAGGTCCTCAAGAACTGGCTCGAGTCCTACAAGCCGGA AGAGCTGTTCGACGCCAACGGCGCCGTCAAGGACGACGTCCTCGCCTTCATGCCGAAGGGCGAGCTGCGTATCGGTGCCA ACCCGAACGCCAACGGCGGTGTGATCCGCGACGACCTGAAGCTGCCGAACCTCGAGGACTACGAGGTCAAGGAAGTGGCC GAGTTCGGCCACGGCTGGGGCCAGCTCGAGGCCACCCGCTCCCTGGGCGCCTACACCCGCGACATCATCAAGAACAACCC GCGTGACTTCCGCATCTTCGGACCGGATGAGACCGCTTCCAACCGTCTGCAGGCTTCCTACGAAGTCACCAACAAGCAGT GGGATGCCGGCTACATCTCCGACGAGGTCGACGAGCACATGCGCGTCTCCGGCCAGGTCGTCGAGCAGCTGTCCGAGCAC CAGATGGAAGGCTTCCTCGAGGCCTACCTGCTGACCGGCCGTCACGGCATCTGGAGCTCCTACGAGTCCTTCGTCCACGT GATCGACTCCATGCTGAACCAGCACGCCAAGTGGCTTGAGGCTACCGTCCGCGAGATTCCGTGGCGCAAGCCGATCGCCT CCATGAACCTGCTGGTCTCCTCCCACGTCTGGCGTCAGGACCACAACGGCTTCTCCCACCAGGATCCGGGTGTCACCTCC GTCCTGCTGAACAAGTGCTTCCACAACGACCACGTCATCGGCATCTACTTCGCCACCGACGCGAACATGCTGCTGGCCAT CGCCGAGAAGTGCTACAAGTCCACCAACAAGATCAACGCCATCATCGCCGGCAAGCAGCCCGCCGCCACCTGGCTGACCC TGGACGAGGCTCGCGCCGAGCTCGAGAAGGGTGCCGCCGCTTGGGACTGGGCCTCCACCGCCAAGACCAACGATGAAGCC GAGATCGTGCTTGCCGCCGCCGGCGACGTCCCCACCCAGGAGATCATGGCCGCTTCCGACAAGCTGAAGGAACTGGGCAT CAAGTTCAAGGTCGTGAACGTTGTCGACCTGCTCTCCCTGCAGTCCGCCAAGGAGAACGACGAGGCCCTGTCCAACGAGG AGTTCGCCGACATCTTCACCGCCGACAAGCCGGTGCTGTTCGCGTACCACTCCTACGCCCACGACGTGCGCGGTCTGATC TACGATCGTCCGAACCACGACAACTTCAACGTCCACGGCTACGAGGAGGAGGGCTCCACCACCACCCCGTACGACATGGT TCGTGTCAACCGCATCGACCGCTACGAGCTGACCGCTGAGGCTCTGCGCATGATCGACGCCGACAAGTACGCCGACAAGA TCGACGAGCTCGAGAAGTTCCGTGATGAGGCCTTCCAGTTCGCCGTCGACAAGGGCTACGACCACCCGGACTACACCGAC TGGGTGTACTCCGGCGTGAACACCGGCAAGAAGGGTGCCGTCACCGCTACCGCCGCTACCGCTGGCGACAACGAGTGA
Upstream 100 bases:
>100_bases TTGACTGGGAACGGAAAACCTTGGCACCGCAAGGGTCAGGGACCGTGACCGAACAGAAATAATCAATCGCACGATTACGT GCAGGAGTACAGGAGTACAC
Downstream 100 bases:
>100_bases TAACACCTCCACGGTGTCGTTAGACCGCTGACGAAACAGGGCCCGGGATCCGTCCCGGGCCCTGTTCGCATATCGGCACC GGCTGTGCCGCCCGGCCGCC
Product: phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 825; Mature: 824
Protein sequence:
>825_residues MTSPVIGTPWKKLSAPVSEEALEGVDKYWRVANYLSIGQIYLRSNPLMKEPFTREDVKHRLVGHWGTTPGLNFLIGHINR FIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYA LSHAYGAIMDNPSLFVPAIVGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSRISDEELHEFFHGM GYEPYEFVAGFDDEDHMSIHRRFAELWETIWDEICDIKATAQTDNVHRPFYPMLIFRTPKGWTCPKYIDGKKTEGSWRSH QVPLASARDTEAHFEVLKNWLESYKPEELFDANGAVKDDVLAFMPKGELRIGANPNANGGVIRDDLKLPNLEDYEVKEVA EFGHGWGQLEATRSLGAYTRDIIKNNPRDFRIFGPDETASNRLQASYEVTNKQWDAGYISDEVDEHMRVSGQVVEQLSEH QMEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPIASMNLLVSSHVWRQDHNGFSHQDPGVTS VLLNKCFHNDHVIGIYFATDANMLLAIAEKCYKSTNKINAIIAGKQPAATWLTLDEARAELEKGAAAWDWASTAKTNDEA EIVLAAAGDVPTQEIMAASDKLKELGIKFKVVNVVDLLSLQSAKENDEALSNEEFADIFTADKPVLFAYHSYAHDVRGLI YDRPNHDNFNVHGYEEEGSTTTPYDMVRVNRIDRYELTAEALRMIDADKYADKIDELEKFRDEAFQFAVDKGYDHPDYTD WVYSGVNTGKKGAVTATAATAGDNE
Sequences:
>Translated_825_residues MTSPVIGTPWKKLSAPVSEEALEGVDKYWRVANYLSIGQIYLRSNPLMKEPFTREDVKHRLVGHWGTTPGLNFLIGHINR FIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYA LSHAYGAIMDNPSLFVPAIVGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSRISDEELHEFFHGM GYEPYEFVAGFDDEDHMSIHRRFAELWETIWDEICDIKATAQTDNVHRPFYPMLIFRTPKGWTCPKYIDGKKTEGSWRSH QVPLASARDTEAHFEVLKNWLESYKPEELFDANGAVKDDVLAFMPKGELRIGANPNANGGVIRDDLKLPNLEDYEVKEVA EFGHGWGQLEATRSLGAYTRDIIKNNPRDFRIFGPDETASNRLQASYEVTNKQWDAGYISDEVDEHMRVSGQVVEQLSEH QMEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPIASMNLLVSSHVWRQDHNGFSHQDPGVTS VLLNKCFHNDHVIGIYFATDANMLLAIAEKCYKSTNKINAIIAGKQPAATWLTLDEARAELEKGAAAWDWASTAKTNDEA EIVLAAAGDVPTQEIMAASDKLKELGIKFKVVNVVDLLSLQSAKENDEALSNEEFADIFTADKPVLFAYHSYAHDVRGLI YDRPNHDNFNVHGYEEEGSTTTPYDMVRVNRIDRYELTAEALRMIDADKYADKIDELEKFRDEAFQFAVDKGYDHPDYTD WVYSGVNTGKKGAVTATAATAGDNE >Mature_824_residues TSPVIGTPWKKLSAPVSEEALEGVDKYWRVANYLSIGQIYLRSNPLMKEPFTREDVKHRLVGHWGTTPGLNFLIGHINRF IADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYAL SHAYGAIMDNPSLFVPAIVGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSRISDEELHEFFHGMG YEPYEFVAGFDDEDHMSIHRRFAELWETIWDEICDIKATAQTDNVHRPFYPMLIFRTPKGWTCPKYIDGKKTEGSWRSHQ VPLASARDTEAHFEVLKNWLESYKPEELFDANGAVKDDVLAFMPKGELRIGANPNANGGVIRDDLKLPNLEDYEVKEVAE FGHGWGQLEATRSLGAYTRDIIKNNPRDFRIFGPDETASNRLQASYEVTNKQWDAGYISDEVDEHMRVSGQVVEQLSEHQ MEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPIASMNLLVSSHVWRQDHNGFSHQDPGVTSV LLNKCFHNDHVIGIYFATDANMLLAIAEKCYKSTNKINAIIAGKQPAATWLTLDEARAELEKGAAAWDWASTAKTNDEAE IVLAAAGDVPTQEIMAASDKLKELGIKFKVVNVVDLLSLQSAKENDEALSNEEFADIFTADKPVLFAYHSYAHDVRGLIY DRPNHDNFNVHGYEEEGSTTTPYDMVRVNRIDRYELTAEALRMIDADKYADKIDELEKFRDEAFQFAVDKGYDHPDYTDW VYSGVNTGKKGAVTATAATAGDNE
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 92460; Mature: 92329
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPVIGTPWKKLSAPVSEEALEGVDKYWRVANYLSIGQIYLRSNPLMKEPFTREDVKHR CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCHHHHHHH LVGHWGTTPGLNFLIGHINRFIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKIT HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCC KDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAIMDNPSLFVPAIV CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE GDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSRISDEELHEFFHGM CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCHHHHHCCHHHHHHHHHHC GYEPYEFVAGFDDEDHMSIHRRFAELWETIWDEICDIKATAQTDNVHRPFYPMLIFRTPK CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCC GWTCPKYIDGKKTEGSWRSHQVPLASARDTEAHFEVLKNWLESYKPEELFDANGAVKDDV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHH LAFMPKGELRIGANPNANGGVIRDDLKLPNLEDYEVKEVAEFGHGWGQLEATRSLGAYTR HEECCCCCEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH DIIKNNPRDFRIFGPDETASNRLQASYEVTNKQWDAGYISDEVDEHMRVSGQVVEQLSEH HHHHCCCCCEEEECCCCCCCHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QMEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPIASMNLLVS HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SHVWRQDHNGFSHQDPGVTSVLLNKCFHNDHVIGIYFATDANMLLAIAEKCYKSTNKINA HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEE IIAGKQPAATWLTLDEARAELEKGAAAWDWASTAKTNDEAEIVLAAAGDVPTQEIMAASD EEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH KLKELGIKFKVVNVVDLLSLQSAKENDEALSNEEFADIFTADKPVLFAYHSYAHDVRGLI HHHHCCCEEEEEHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCCEEEEEHHHHHHHHHHE YDRPNHDNFNVHGYEEEGSTTTPYDMVRVNRIDRYELTAEALRMIDADKYADKIDELEKF ECCCCCCCCCEEEECCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RDEAFQFAVDKGYDHPDYTDWVYSGVNTGKKGAVTATAATAGDNE HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure TSPVIGTPWKKLSAPVSEEALEGVDKYWRVANYLSIGQIYLRSNPLMKEPFTREDVKHR CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCHHHHHHH LVGHWGTTPGLNFLIGHINRFIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKIT HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCC KDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAIMDNPSLFVPAIV CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE GDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSRISDEELHEFFHGM CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCHHHHHCCHHHHHHHHHHC GYEPYEFVAGFDDEDHMSIHRRFAELWETIWDEICDIKATAQTDNVHRPFYPMLIFRTPK CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCC GWTCPKYIDGKKTEGSWRSHQVPLASARDTEAHFEVLKNWLESYKPEELFDANGAVKDDV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHH LAFMPKGELRIGANPNANGGVIRDDLKLPNLEDYEVKEVAEFGHGWGQLEATRSLGAYTR HEECCCCCEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH DIIKNNPRDFRIFGPDETASNRLQASYEVTNKQWDAGYISDEVDEHMRVSGQVVEQLSEH HHHHCCCCCEEEECCCCCCCHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QMEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPIASMNLLVS HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SHVWRQDHNGFSHQDPGVTSVLLNKCFHNDHVIGIYFATDANMLLAIAEKCYKSTNKINA HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEE IIAGKQPAATWLTLDEARAELEKGAAAWDWASTAKTNDEAEIVLAAAGDVPTQEIMAASD EEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH KLKELGIKFKVVNVVDLLSLQSAKENDEALSNEEFADIFTADKPVLFAYHSYAHDVRGLI HHHHCCCEEEEEHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCCEEEEEHHHHHHHHHHE YDRPNHDNFNVHGYEEEGSTTTPYDMVRVNRIDRYELTAEALRMIDADKYADKIDELEKF ECCCCCCCCCEEEECCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RDEAFQFAVDKGYDHPDYTDWVYSGVNTGKKGAVTATAATAGDNE HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA