| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is pdxK [H]
Identifier: 213692565
GI number: 213692565
Start: 1856080
End: 1856952
Strand: Direct
Name: pdxK [H]
Synonym: Blon_1697
Alternate gene names: 213692565
Gene position: 1856080-1856952 (Clockwise)
Preceding gene: 213692561
Following gene: 213692566
Centisome position: 65.52
GC content: 59.56
Gene sequence:
>873_bases ATGACCGATGTAACACTGTATGACCGTGATCCGAGCTATATTCCGCGCGTGGCCGCCGTGCACGACATGTGCGGCTACGG CAAGTGCTCACTGACCGCCGCGATTCCGATTCTCTCGGCCGCAGGCTGCGATGTGTGCCCGGTGCCGACCGCCCTGTTCT CGGCGCACACGCGCTATGCAGTGTTCACGTTCCACGACACCACGGATATTCTCTCCGGTTACTTGGATGCCTGGCAGAAG GAAGACGTGGAACTGGATGGCGTGTATTCAGGCTTCCTCGGCTCCCCCGATCAGGTGGCGATCATTCAGCGTCTCTACCG TGAATATCCGAACGCGCTGCGTCTGGTTGACCCGGTGATGGGAGACGCCGGCGAAATGTACCCCACGTATACACCGGAGC TGTGCGAGGCAATGGGCGCTCTGGCCGATGGTGCCGACGTGTTGATGCCGAACCTCACCGAAGCGAGTATTCTCACCAAG CGTGACTATCCTGGCCAGAATATTGATGAGGCCACGGTTAACGAGCTGCTTGGTGCTCTGCTGAAGTTGGGTGCCAAGAA CGTGGTGTTGAAGGGCATCGACCATGGCGATGGCAAAATCGTCAACTATGTGGCCAGCGCTTCCACCGGTGTTGCCGGCA AGATCGAGCTGGCTCATGAAAAGCTGCCATACATGATTCATGGCACGGGTGACGCCTTCGCATCTGCCCTGTGCGGCGCG GTGATGGCCGGCCGCGGCTTGGCCAAGTCGGCCGAAATCGCCGGCGAGTTCGTGCGACACGCCATGGTCAGCACCCGTGA CCAGCCGCATTTCGAGGATCGTGGCGTCAGCTTCGAACTGAACCTTGGCGAACTCACCGATTTGGTGAAGTGA
Upstream 100 bases:
>100_bases TTTTTCCGCCGCCCGGTTACATGGTTTACATGACGAACGACTACAGTCAAACATCGCCAATGAATTATTCCGCCAACATG GTGAAGGGGTTCGAACAGAC
Downstream 100 bases:
>100_bases CCGCACCTTGGCTCCCCTCTCCGCTCACTGGGTCTGACGTATTCAGCGAACAACTCGGCGGGTTGTTTGTCATCACAGGT AAGTCGGCTGGGGAGCCTTG
Product: Phosphomethylpyrimidine kinase type-1
Products: NA
Alternate protein names: PN/PL/PM kinase; Pyridoxal kinase; Pyridoxamine kinase; Vitamin B6 kinase [H]
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQK EDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTK RDYPGQNIDEATVNELLGALLKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK
Sequences:
>Translated_290_residues MTDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQK EDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTK RDYPGQNIDEATVNELLGALLKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK >Mature_289_residues TDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQKE DVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKR DYPGQNIDEATVNELLGALLKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGAV MAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK
Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxal, pyridoxine, and pyridoxamine as substrates [H]
COG id: COG2240
COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyridoxine kinase family [H]
Homologues:
Organism=Escherichia coli, GI1788758, Length=286, Percent_Identity=28.3216783216783, Blast_Score=83, Evalue=3e-17, Organism=Drosophila melanogaster, GI45553007, Length=259, Percent_Identity=27.4131274131274, Blast_Score=71, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013749 - InterPro: IPR004625 [H]
Pfam domain/function: PF08543 Phos_pyr_kin [H]
EC number: =2.7.1.35 [H]
Molecular weight: Translated: 31081; Mature: 30949
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYA CCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEE VFTFHDTTDILSGYLDAWQKEDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVM EEEECCHHHHHHHHHHHHHHCCCEECCCHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH GDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKRDYPGQNIDEATVNELLGAL CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCHHHHEECCCCCCCCCCHHHHHHHHHHH LKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA HHCCCCCEEEECCCCCCCCEEEEEHHCCCCCCEEEEEHHCCCCEEEEECCHHHHHHHHHH VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEECHHHHHHHCC >Mature Secondary Structure TDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYA CCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEE VFTFHDTTDILSGYLDAWQKEDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVM EEEECCHHHHHHHHHHHHHHCCCEECCCHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH GDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKRDYPGQNIDEATVNELLGAL CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCHHHHEECCCCCCCCCCHHHHHHHHHHH LKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA HHCCCCCEEEECCCCCCCCEEEEEHHCCCCCCEEEEEHHCCCCEEEEECCHHHHHHHHHH VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEECHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA