Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is pdxK [H]

Identifier: 213692565

GI number: 213692565

Start: 1856080

End: 1856952

Strand: Direct

Name: pdxK [H]

Synonym: Blon_1697

Alternate gene names: 213692565

Gene position: 1856080-1856952 (Clockwise)

Preceding gene: 213692561

Following gene: 213692566

Centisome position: 65.52

GC content: 59.56

Gene sequence:

>873_bases
ATGACCGATGTAACACTGTATGACCGTGATCCGAGCTATATTCCGCGCGTGGCCGCCGTGCACGACATGTGCGGCTACGG
CAAGTGCTCACTGACCGCCGCGATTCCGATTCTCTCGGCCGCAGGCTGCGATGTGTGCCCGGTGCCGACCGCCCTGTTCT
CGGCGCACACGCGCTATGCAGTGTTCACGTTCCACGACACCACGGATATTCTCTCCGGTTACTTGGATGCCTGGCAGAAG
GAAGACGTGGAACTGGATGGCGTGTATTCAGGCTTCCTCGGCTCCCCCGATCAGGTGGCGATCATTCAGCGTCTCTACCG
TGAATATCCGAACGCGCTGCGTCTGGTTGACCCGGTGATGGGAGACGCCGGCGAAATGTACCCCACGTATACACCGGAGC
TGTGCGAGGCAATGGGCGCTCTGGCCGATGGTGCCGACGTGTTGATGCCGAACCTCACCGAAGCGAGTATTCTCACCAAG
CGTGACTATCCTGGCCAGAATATTGATGAGGCCACGGTTAACGAGCTGCTTGGTGCTCTGCTGAAGTTGGGTGCCAAGAA
CGTGGTGTTGAAGGGCATCGACCATGGCGATGGCAAAATCGTCAACTATGTGGCCAGCGCTTCCACCGGTGTTGCCGGCA
AGATCGAGCTGGCTCATGAAAAGCTGCCATACATGATTCATGGCACGGGTGACGCCTTCGCATCTGCCCTGTGCGGCGCG
GTGATGGCCGGCCGCGGCTTGGCCAAGTCGGCCGAAATCGCCGGCGAGTTCGTGCGACACGCCATGGTCAGCACCCGTGA
CCAGCCGCATTTCGAGGATCGTGGCGTCAGCTTCGAACTGAACCTTGGCGAACTCACCGATTTGGTGAAGTGA

Upstream 100 bases:

>100_bases
TTTTTCCGCCGCCCGGTTACATGGTTTACATGACGAACGACTACAGTCAAACATCGCCAATGAATTATTCCGCCAACATG
GTGAAGGGGTTCGAACAGAC

Downstream 100 bases:

>100_bases
CCGCACCTTGGCTCCCCTCTCCGCTCACTGGGTCTGACGTATTCAGCGAACAACTCGGCGGGTTGTTTGTCATCACAGGT
AAGTCGGCTGGGGAGCCTTG

Product: Phosphomethylpyrimidine kinase type-1

Products: NA

Alternate protein names: PN/PL/PM kinase; Pyridoxal kinase; Pyridoxamine kinase; Vitamin B6 kinase [H]

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQK
EDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTK
RDYPGQNIDEATVNELLGALLKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA
VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK

Sequences:

>Translated_290_residues
MTDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQK
EDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTK
RDYPGQNIDEATVNELLGALLKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA
VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK
>Mature_289_residues
TDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQKE
DVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKR
DYPGQNIDEATVNELLGALLKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGAV
MAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK

Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxal, pyridoxine, and pyridoxamine as substrates [H]

COG id: COG2240

COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pyridoxine kinase family [H]

Homologues:

Organism=Escherichia coli, GI1788758, Length=286, Percent_Identity=28.3216783216783, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI45553007, Length=259, Percent_Identity=27.4131274131274, Blast_Score=71, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013749
- InterPro:   IPR004625 [H]

Pfam domain/function: PF08543 Phos_pyr_kin [H]

EC number: =2.7.1.35 [H]

Molecular weight: Translated: 31081; Mature: 30949

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYA
CCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEE
VFTFHDTTDILSGYLDAWQKEDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVM
EEEECCHHHHHHHHHHHHHHCCCEECCCHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
GDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKRDYPGQNIDEATVNELLGAL
CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCHHHHEECCCCCCCCCCHHHHHHHHHHH
LKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA
HHCCCCCEEEECCCCCCCCEEEEEHHCCCCCCEEEEEHHCCCCEEEEECCHHHHHHHHHH
VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEECHHHHHHHCC
>Mature Secondary Structure 
TDVTLYDRDPSYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYA
CCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEE
VFTFHDTTDILSGYLDAWQKEDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVM
EEEECCHHHHHHHHHHHHHHCCCEECCCHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
GDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKRDYPGQNIDEATVNELLGAL
CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCHHHHEECCCCCCCCCCHHHHHHHHHHH
LKLGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA
HHCCCCCEEEECCCCCCCCEEEEEHHCCCCCCEEEEEHHCCCCEEEEECCHHHHHHHHHH
VMAGRGLAKSAEIAGEFVRHAMVSTRDQPHFEDRGVSFELNLGELTDLVK
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEECHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA