| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is serB [H]
Identifier: 213692533
GI number: 213692533
Start: 1816262
End: 1816909
Strand: Reverse
Name: serB [H]
Synonym: Blon_1665
Alternate gene names: 213692533
Gene position: 1816909-1816262 (Counterclockwise)
Preceding gene: 213692535
Following gene: 213692529
Centisome position: 64.14
GC content: 51.7
Gene sequence:
>648_bases ATGGCGGGAATTGCATTTTTTGATATCGACGGAACGCTCACATACGGCATTAGCTCTGGCGCATTTATTGCGGACCGGTT GGGTACCGGCGACAGGATGCGAGATGCAGAGGATCGATACGCACGCGGTGAGATCGGAAATGACACGGTATGCGATATTG ATGCTCGTGGATACACTGGCCATCGGGTAAGTGAAATTCACGGATGGTTGAACGATCTCCCGCTTGTGCAAGGAATCGCA CAGTCCGTTGCGGAATGCAAGTCGAGGGGAATCAAGCCAGTCCTCGCATCCTGCGCTTGGACAGTCGTTTCCGAGAGCCT TGCGCAGAGATTTGGATTTGAAGCATGGTGCGGTCCAGAACTTGCTGTCAAGGATGGCGTGTTTATTGGTAAAACAGCGG CATATGCCGATGAACAAACCAAAGTAACATTCATGAGGCAGCAATGTGAATGCTTGGGAGTTGAAGCTTCGAATTGCATC GCTATTGGTGACAGTCGTTCTGACCTACCGCTGTTCAAAGCCGTCGGTGTCTCGCTTGCCTTCAACGCGGACAAGCAGAC ACGTGCTGCTGCGACTTTTGCTTTCGAAGGAGCGGATCTATCCACTGCGCTAGCCCGTCTCTTTGAACATTTGCCAGTTG AAAGCTGA
Upstream 100 bases:
>100_bases ACTATCTGCCTTTCTTTTCTGATATGTGTGCCTTTTGATACGCTATTGGCTTAGTTACCGGCTGGAGGTTCGGGCTGAAC CAGTAAATGAAGAGGGATGA
Downstream 100 bases:
>100_bases CTTCAGACTGACAGGCTGCACACTGAGGACAAGATTGGGAACGAGCCTCCCAAAAAGCTTTTCGAGGTCGTATCATTCGT GAGCTTCATGCGTGAACACC
Product: Haloacid dehalogenase domain protein hydrolase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MAGIAFFDIDGTLTYGISSGAFIADRLGTGDRMRDAEDRYARGEIGNDTVCDIDARGYTGHRVSEIHGWLNDLPLVQGIA QSVAECKSRGIKPVLASCAWTVVSESLAQRFGFEAWCGPELAVKDGVFIGKTAAYADEQTKVTFMRQQCECLGVEASNCI AIGDSRSDLPLFKAVGVSLAFNADKQTRAAATFAFEGADLSTALARLFEHLPVES
Sequences:
>Translated_215_residues MAGIAFFDIDGTLTYGISSGAFIADRLGTGDRMRDAEDRYARGEIGNDTVCDIDARGYTGHRVSEIHGWLNDLPLVQGIA QSVAECKSRGIKPVLASCAWTVVSESLAQRFGFEAWCGPELAVKDGVFIGKTAAYADEQTKVTFMRQQCECLGVEASNCI AIGDSRSDLPLFKAVGVSLAFNADKQTRAAATFAFEGADLSTALARLFEHLPVES >Mature_214_residues AGIAFFDIDGTLTYGISSGAFIADRLGTGDRMRDAEDRYARGEIGNDTVCDIDARGYTGHRVSEIHGWLNDLPLVQGIAQ SVAECKSRGIKPVLASCAWTVVSESLAQRFGFEAWCGPELAVKDGVFIGKTAAYADEQTKVTFMRQQCECLGVEASNCIA IGDSRSDLPLFKAVGVSLAFNADKQTRAAATFAFEGADLSTALARLFEHLPVES
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Escherichia coli, GI1790849, Length=201, Percent_Identity=28.3582089552239, Blast_Score=76, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 23057; Mature: 22926
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGIAFFDIDGTLTYGISSGAFIADRLGTGDRMRDAEDRYARGEIGNDTVCDIDARGYTG CCCEEEEECCCEEEECCCCCCEEEHHCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCC HRVSEIHGWLNDLPLVQGIAQSVAECKSRGIKPVLASCAWTVVSESLAQRFGFEAWCGPE CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LAVKDGVFIGKTAAYADEQTKVTFMRQQCECLGVEASNCIAIGDSRSDLPLFKAVGVSLA EEECCCEEECCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHCCEEE FNADKQTRAAATFAFEGADLSTALARLFEHLPVES ECCCCHHHHHEEEEECCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure AGIAFFDIDGTLTYGISSGAFIADRLGTGDRMRDAEDRYARGEIGNDTVCDIDARGYTG CCEEEEECCCEEEECCCCCCEEEHHCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCC HRVSEIHGWLNDLPLVQGIAQSVAECKSRGIKPVLASCAWTVVSESLAQRFGFEAWCGPE CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LAVKDGVFIGKTAAYADEQTKVTFMRQQCECLGVEASNCIAIGDSRSDLPLFKAVGVSLA EEECCCEEECCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHCCEEE FNADKQTRAAATFAFEGADLSTALARLFEHLPVES ECCCCHHHHHEEEEECCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]