Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is ykaA [H]

Identifier: 213692505

GI number: 213692505

Start: 1786786

End: 1787409

Strand: Reverse

Name: ykaA [H]

Synonym: Blon_1634

Alternate gene names: 213692505

Gene position: 1787409-1786786 (Counterclockwise)

Preceding gene: 213692506

Following gene: 213692502

Centisome position: 63.1

GC content: 59.78

Gene sequence:

>624_bases
ATGGCGAGACAAAAAGACGTGTTCTACTTCGACGGATTCCGCCGCAGCGCGGACTACGCATGCCAGGCCGCGAAGCTGCT
GTCCGAGGTCATGCACGACTTCAATCCGGACCAGCTGCGCGAACGCATGGACAGCATGCACGCGATTGAGAAGTCGGCGG
ACGAGGTGCGCCACGACATGATGGACGAACTGGTGACCGCGTTCATCACGCCGTTCGACCGCGAGGACATCGACGAGCTT
GGCCACGTGCTCGACGATGTGACCGACAGCATCGAAGGCGTACTCAACCGCATGTACTACGACAATGTGACCGACATGCG
CGACGATGCGGTCCAGATGTCGGATATGGTGGTGCGCGCCACGGAAAGCATCTGCGAGCTGGTCAACGAACTGCCGCGAT
TCCGGCATTCCAAGACGTTGCGCGAACTGGTGTTCGCCATCAACACGATCGAAACGGACGCCGACCACCTGTTCATCGAG
TCGATGCGCACGCTGCACACCACCTGCACCGATCCGCTGCAGGTGTTCGCCTGGCATGACGTGTACCGTCACCTCGAACA
GTGCTCCGACGACTGCGAGCGCGTGGCCAACACCATCGACAGTATCGTCATGAAAAACAGCTGA

Upstream 100 bases:

>100_bases
TGATGCTCACCTGGGTGTTCACCTTCCCCGGTTGCGGTCTCATCAGCTTCGTAATGGCCAAACTGTTCATGGTCGTGTTC
TAGAAAGGAATCCACCCATC

Downstream 100 bases:

>100_bases
GGTTGGTTTTTCACAACCTCCCTCTGATGAGCCGAGCCGTGAAGAAAACGCCGGAGGTGTTTTTAGGCGAGGGTGAGTGA
GAACGAGCGAATAAGAGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDMMDELVTAFITPFDREDIDEL
GHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRATESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIE
SMRTLHTTCTDPLQVFAWHDVYRHLEQCSDDCERVANTIDSIVMKNS

Sequences:

>Translated_207_residues
MARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDMMDELVTAFITPFDREDIDEL
GHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRATESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIE
SMRTLHTTCTDPLQVFAWHDVYRHLEQCSDDCERVANTIDSIVMKNS
>Mature_206_residues
ARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDMMDELVTAFITPFDREDIDELG
HVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRATESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIES
MRTLHTTCTDPLQVFAWHDVYRHLEQCSDDCERVANTIDSIVMKNS

Specific function: Unknown

COG id: COG1392

COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0111 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012347
- InterPro:   IPR018445 [H]

Pfam domain/function: PF01865 PhoU_div [H]

EC number: NA

Molecular weight: Translated: 24125; Mature: 23994

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDM
CCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MDELVTAFITPFDREDIDELGHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIESMRTLHTTCTDPLQVFAWHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
VYRHLEQCSDDCERVANTIDSIVMKNS
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARQKDVFYFDGFRRSADYACQAAKLLSEVMHDFNPDQLRERMDSMHAIEKSADEVRHDM
CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MDELVTAFITPFDREDIDELGHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIESMRTLHTTCTDPLQVFAWHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
VYRHLEQCSDDCERVANTIDSIVMKNS
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]