| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692485
Identifier: 213692485
GI number: 213692485
Start: 1764909
End: 1766126
Strand: Reverse
Name: 213692485
Synonym: Blon_1614
Alternate gene names: NA
Gene position: 1766126-1764909 (Counterclockwise)
Preceding gene: 213692486
Following gene: 213692484
Centisome position: 62.35
GC content: 60.1
Gene sequence:
>1218_bases GTGCCATCCCATATCGCATTGCGCGGCCTTCCGATTGAAAACCTCAAACGCAAGCCGTTCCGCACCGGCGCACTGCTCGC CGTCGTCACCATCCTCGCGCTGACGTTCTTCGGCGGCACCATGCTGACCATGAACCTCAACACCGGCATGACCAGTATGG AGAAGCGCCTGGGCGCCGACCTTATGGTCGTGCCGCAAAACACCGCGCAGAAGGCTGAAGCGCTGCTCACCAGCGGCAAT CCCAGCACTTTCTATTTCACCAAAGACATCGCCGACGAGGTCATGCAGGCCGACGGCATCGCACAGGCCACCGAACAGAC CTATATATCGTCGCTGGCCGCCGCCTGCTGTGCCGAAAAGCTGCAGATCATCGGTTACGACCCGGACACTGACTTCGTCA TCGAACCATGGGTCGCATCCCAGTTCGAAGGCCCCCTTGAAGACGGTCAGATGATTGCCGGCGCAAACGTCAACGTGTCC ACCGACGGCACCATCGAACTCTACGGCCATAAGTGGCCGGTCGTCGCCCAGCTCGCCAACACCGGCACCAGCCTCGACAA TTCGGTGTTCATCAGCCAAAACACCGTGCCTGATATGGTCGCCGCCTCGGCCAAGGTCTCCAAGCAGGTCATGCCCGCCG AATATGCAGGCGAAGCCGTCTCCACCGTGATGATCAAGACGCAGCGGGGTTACGAAGCGCAGACCGTGGCTGAGAACATC AAGCGTCTTGACTCCCGGTTCGCCGATTTGGGGTACGTATACCCCGGCGGCATCACCGCCAACACCAGAACTTCGCTGAC CGCGCTTGTCACCTACCTCAAGATTTTCGTGGCGGTGATCTGGGTAATGGGCGTGATTGTGCTGCTCGCCGTATTCGCCT CGTCGGTGAACGAACGCAAACGCGAATTCGCGTCCCTGCGCATCATGGGCGCCACGCGCGGCATGTTGAATGCCATCATT CTGAAGGAATCCGCCATCATCGGTCTGATCGGTGGCGTAATCGGCGTCGGCGCGGCCAGCCTGGTGATTTTCCCATTCAG TTCGCTGATCGGCAAACAGCTTCAATTGCCGTATCTGCAAGCCAGCCCGGTTGCGGTGATCGGATTCATTGCCGTGACCG TTGTGTGCTCTACGAGCATCGGCATCATCGGTTCGCTGGCCACCATGTGGCGTCTCGGCCGGCCCGAAGCCTACCTGACC CTGCGAGAGGGGGAGTGA
Upstream 100 bases:
>100_bases GCGCAACTGATCGAGCAGACGGCCGGAGCCCAGCCATTCCGAACGCTGGACTCCGGTCTCGCTTATTGCAACCGCACTAT AAGCAACATAAGGACTCATC
Downstream 100 bases:
>100_bases TATGACTGAGACAACTACGCCGCTTCAGCCGACCACGGTTGGGCCGACCAATCTCCCGCCGACCACGCCAGCTCAGCCGA ACGCGCCGACTGCGTCGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; ABC Transporter Permease Protein; ABC Transporter Membrane Protein; Efflux ABC Transporter Permease Protein; Efflux ABC Transporter Permease; ABC Transporter
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MPSHIALRGLPIENLKRKPFRTGALLAVVTILALTFFGGTMLTMNLNTGMTSMEKRLGADLMVVPQNTAQKAEALLTSGN PSTFYFTKDIADEVMQADGIAQATEQTYISSLAAACCAEKLQIIGYDPDTDFVIEPWVASQFEGPLEDGQMIAGANVNVS TDGTIELYGHKWPVVAQLANTGTSLDNSVFISQNTVPDMVAASAKVSKQVMPAEYAGEAVSTVMIKTQRGYEAQTVAENI KRLDSRFADLGYVYPGGITANTRTSLTALVTYLKIFVAVIWVMGVIVLLAVFASSVNERKREFASLRIMGATRGMLNAII LKESAIIGLIGGVIGVGAASLVIFPFSSLIGKQLQLPYLQASPVAVIGFIAVTVVCSTSIGIIGSLATMWRLGRPEAYLT LREGE
Sequences:
>Translated_405_residues MPSHIALRGLPIENLKRKPFRTGALLAVVTILALTFFGGTMLTMNLNTGMTSMEKRLGADLMVVPQNTAQKAEALLTSGN PSTFYFTKDIADEVMQADGIAQATEQTYISSLAAACCAEKLQIIGYDPDTDFVIEPWVASQFEGPLEDGQMIAGANVNVS TDGTIELYGHKWPVVAQLANTGTSLDNSVFISQNTVPDMVAASAKVSKQVMPAEYAGEAVSTVMIKTQRGYEAQTVAENI KRLDSRFADLGYVYPGGITANTRTSLTALVTYLKIFVAVIWVMGVIVLLAVFASSVNERKREFASLRIMGATRGMLNAII LKESAIIGLIGGVIGVGAASLVIFPFSSLIGKQLQLPYLQASPVAVIGFIAVTVVCSTSIGIIGSLATMWRLGRPEAYLT LREGE >Mature_404_residues PSHIALRGLPIENLKRKPFRTGALLAVVTILALTFFGGTMLTMNLNTGMTSMEKRLGADLMVVPQNTAQKAEALLTSGNP STFYFTKDIADEVMQADGIAQATEQTYISSLAAACCAEKLQIIGYDPDTDFVIEPWVASQFEGPLEDGQMIAGANVNVST DGTIELYGHKWPVVAQLANTGTSLDNSVFISQNTVPDMVAASAKVSKQVMPAEYAGEAVSTVMIKTQRGYEAQTVAENIK RLDSRFADLGYVYPGGITANTRTSLTALVTYLKIFVAVIWVMGVIVLLAVFASSVNERKREFASLRIMGATRGMLNAIIL KESAIIGLIGGVIGVGAASLVIFPFSSLIGKQLQLPYLQASPVAVIGFIAVTVVCSTSIGIIGSLATMWRLGRPEAYLTL REGE
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43262; Mature: 43131
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSHIALRGLPIENLKRKPFRTGALLAVVTILALTFFGGTMLTMNLNTGMTSMEKRLGAD CCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC LMVVPQNTAQKAEALLTSGNPSTFYFTKDIADEVMQADGIAQATEQTYISSLAAACCAEK EEEECCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH LQIIGYDPDTDFVIEPWVASQFEGPLEDGQMIAGANVNVSTDGTIELYGHKWPVVAQLAN CEEEECCCCCCCEECCCHHHCCCCCCCCCCEEECCCEEECCCCEEEEECCCCHHHHHHHH TGTSLDNSVFISQNTVPDMVAASAKVSKQVMPAEYAGEAVSTVMIKTQRGYEAQTVAENI CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHCHHHHEEEEEECCCCCHHHHHHHH KRLDSRFADLGYVYPGGITANTRTSLTALVTYLKIFVAVIWVMGVIVLLAVFASSVNERK HHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REFASLRIMGATRGMLNAIILKESAIIGLIGGVIGVGAASLVIFPFSSLIGKQLQLPYLQ HHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ASPVAVIGFIAVTVVCSTSIGIIGSLATMWRLGRPEAYLTLREGE CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC >Mature Secondary Structure PSHIALRGLPIENLKRKPFRTGALLAVVTILALTFFGGTMLTMNLNTGMTSMEKRLGAD CCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC LMVVPQNTAQKAEALLTSGNPSTFYFTKDIADEVMQADGIAQATEQTYISSLAAACCAEK EEEECCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH LQIIGYDPDTDFVIEPWVASQFEGPLEDGQMIAGANVNVSTDGTIELYGHKWPVVAQLAN CEEEECCCCCCCEECCCHHHCCCCCCCCCCEEECCCEEECCCCEEEEECCCCHHHHHHHH TGTSLDNSVFISQNTVPDMVAASAKVSKQVMPAEYAGEAVSTVMIKTQRGYEAQTVAENI CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHCHHHHEEEEEECCCCCHHHHHHHH KRLDSRFADLGYVYPGGITANTRTSLTALVTYLKIFVAVIWVMGVIVLLAVFASSVNERK HHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REFASLRIMGATRGMLNAIILKESAIIGLIGGVIGVGAASLVIFPFSSLIGKQLQLPYLQ HHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ASPVAVIGFIAVTVVCSTSIGIIGSLATMWRLGRPEAYLTLREGE CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA