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The map label for this gene is cefD [H]

Identifier: 213692257

GI number: 213692257

Start: 1546181

End: 1546840

Strand: Direct

Name: cefD [H]

Synonym: Blon_1377

Alternate gene names: 213692257

Gene position: 1546181-1546840 (Clockwise)

Preceding gene: 213692255

Following gene: 213692258

Centisome position: 54.58

GC content: 64.09

Gene sequence:

>660_bases
ATGGATGAGGGAGATGCGCCAGTTACCATTGACGCCGACGAGGATGGCGTGGTCGACGCCGTGACCGCGCAGATGAGCGA
GCGTACGTCGTTCATCGTGTTGGACCAGATCACTTCCGCCACCGCTATGCTGTTTCCGGCCCAGCGCATCGCCGCCGAAG
CCCATCGCCGCGGCATCCGCATTTTGGTTGGTGGCGCGCACGCTCCCGCCCAACTGGCCGATCCGGTCGGCGGACTGCAG
TCCGATTGGTGGGGCGGCAATTTTCATAAGTTCCCGTGTGCGCCGCGTGGCACGGCATTGCTGGTGATTCCGCCCGAAGG
CGGTCAGGATGGTCAGGATTTGTGGCCACTGATCGACTCGTGGGGTTTCGCCGACCCGTTCCCGGAGCGATTCGATGAGC
AAGGCACCCAGGATTTATGCGGTCCGATTGCCGCGCCCGAGTCCCTGCGCGAGATCGAGCGACTGTGGGGCTGGGATGTC
GTGCGCCGGTACATGTCCGATCTTGCCGATTACGCGGAGCGTCGGGTATCCGAGGCGGCCAGCGAGGTCGGCGGCGAACT
GTACCTGCGCCTCACCGCCCACGCCTACGTCACCACCGACGCCATAGACCGCTTCGCCGAACAATCTATCCCAACCATCG
TCGGATGGCTGCGTGGGTAA

Upstream 100 bases:

>100_bases
GACTCTCGACTTCTGATTCCAAGGTACGGAACATGACGGCATGCGGGTATCGGCCACGAGAGCGAAATCATTGGGATGAA
AGACGATTCGTATCATTCGC

Downstream 100 bases:

>100_bases
GCGAATCGTATGTTGCGTGGTGCCTTAACTATGGATGATTAAGGCGCCAATGCAACAGTATTAGAGTTTTGCGGGTTGTA
GAGCTGCTTACAGAAAATTT

Product: Selenocysteine lyase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDEGDAPVTIDADEDGVVDAVTAQMSERTSFIVLDQITSATAMLFPAQRIAAEAHRRGIRILVGGAHAPAQLADPVGGLQ
SDWWGGNFHKFPCAPRGTALLVIPPEGGQDGQDLWPLIDSWGFADPFPERFDEQGTQDLCGPIAAPESLREIERLWGWDV
VRRYMSDLADYAERRVSEAASEVGGELYLRLTAHAYVTTDAIDRFAEQSIPTIVGWLRG

Sequences:

>Translated_219_residues
MDEGDAPVTIDADEDGVVDAVTAQMSERTSFIVLDQITSATAMLFPAQRIAAEAHRRGIRILVGGAHAPAQLADPVGGLQ
SDWWGGNFHKFPCAPRGTALLVIPPEGGQDGQDLWPLIDSWGFADPFPERFDEQGTQDLCGPIAAPESLREIERLWGWDV
VRRYMSDLADYAERRVSEAASEVGGELYLRLTAHAYVTTDAIDRFAEQSIPTIVGWLRG
>Mature_219_residues
MDEGDAPVTIDADEDGVVDAVTAQMSERTSFIVLDQITSATAMLFPAQRIAAEAHRRGIRILVGGAHAPAQLADPVGGLQ
SDWWGGNFHKFPCAPRGTALLVIPPEGGQDGQDLWPLIDSWGFADPFPERFDEQGTQDLCGPIAAPESLREIERLWGWDV
VRRYMSDLADYAERRVSEAASEVGGELYLRLTAHAYVTTDAIDRFAEQSIPTIVGWLRG

Specific function: Catalyzes the reversible isomerization between isopenicillin N and penicillin N [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =5.1.1.17 [H]

Molecular weight: Translated: 23935; Mature: 23935

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEGDAPVTIDADEDGVVDAVTAQMSERTSFIVLDQITSATAMLFPAQRIAAEAHRRGIR
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCE
ILVGGAHAPAQLADPVGGLQSDWWGGNFHKFPCAPRGTALLVIPPEGGQDGQDLWPLIDS
EEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHC
WGFADPFPERFDEQGTQDLCGPIAAPESLREIERLWGWDVVRRYMSDLADYAERRVSEAA
CCCCCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SEVGGELYLRLTAHAYVTTDAIDRFAEQSIPTIVGWLRG
HHCCCEEEEEEEHHHEEHHHHHHHHHHHCHHHHHHHHCC
>Mature Secondary Structure
MDEGDAPVTIDADEDGVVDAVTAQMSERTSFIVLDQITSATAMLFPAQRIAAEAHRRGIR
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCE
ILVGGAHAPAQLADPVGGLQSDWWGGNFHKFPCAPRGTALLVIPPEGGQDGQDLWPLIDS
EEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHC
WGFADPFPERFDEQGTQDLCGPIAAPESLREIERLWGWDVVRRYMSDLADYAERRVSEAA
CCCCCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SEVGGELYLRLTAHAYVTTDAIDRFAEQSIPTIVGWLRG
HHCCCEEEEEEEHHHEEHHHHHHHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8437592 [H]