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The map label for this gene is rpe [H]

Identifier: 213692248

GI number: 213692248

Start: 1535843

End: 1536511

Strand: Reverse

Name: rpe [H]

Synonym: Blon_1368

Alternate gene names: 213692248

Gene position: 1536511-1535843 (Counterclockwise)

Preceding gene: 213692249

Following gene: 213692247

Centisome position: 54.24

GC content: 65.77

Gene sequence:

>669_bases
ATGAGCAATATCGCAATCGCACCCAGCATCCTGTCCGCTGACTTCTGCAACCTCGAACGTGATCTCAAGGCCATCGCCAA
CGCCGACCTGGTCCACGTCGATGTCATGGACCATCATTTCGTGCCGAACCTGACCCTGGGCGAGCCGATCGTCGGCCGCA
TCTGCCAGGTCACCGATCTGCCGGTCGACGTGCACCTCATGATCGAGGACCCAGACCGTTGGGCCCCCGAATACGCCAAG
CTCGGCGCCGCCTCCGTCTCCTTCCACATGGGTGCCACTCACGCGCCCGTGCGTCTGGCCCGCCAGCTGCGCGAGATGGG
CTGCAAGGCCTGCTTCGCCGTGCGTCCGGCCGAACCGGTCGAGCCGATCTTCGATATCCTCGACGAGTTCGACATGGTCC
TCATCATGACCGTTGAGCCCGGCTTCGGCGGCCAGAAGTTCCTCGACAACCAGATGGCCAAGGTCCGCCGCCTGCGCGAT
GAGATCACCCGCCGTGGCTTGAAGACCCGCATCCAGGTCGATGGCGGCGTGAGCCCCAAGACCGCGCACATCGTGGCCGA
GGCCGGCGCGGACGTGCTGGTCGCCGGTTCCGCCGTGTACGGCGCCGAGGATCCCGCCCAAGCCATTGACGACATCCGCG
CCAAGGCCGAGGCCGCGTTCAAGGCCTGA

Upstream 100 bases:

>100_bases
AAAGCAAGCCAAGCGCACTAAGTGACACCACGATAAACAGCGCCGAAACAGCGCGAAACACGGGACCCCAAGTCCCATTG
CACAGATAAGGTAGGAAACC

Downstream 100 bases:

>100_bases
GCTCCAAGCCTGAACCGCAATCCACCTTTCATCCATAACCACAAGAGAAGAATCTGAATCACATGAAGACGTTTGAATCC
CTGTTCGCCGAACTGTCCGA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSNIAIAPSILSADFCNLERDLKAIANADLVHVDVMDHHFVPNLTLGEPIVGRICQVTDLPVDVHLMIEDPDRWAPEYAK
LGAASVSFHMGATHAPVRLARQLREMGCKACFAVRPAEPVEPIFDILDEFDMVLIMTVEPGFGGQKFLDNQMAKVRRLRD
EITRRGLKTRIQVDGGVSPKTAHIVAEAGADVLVAGSAVYGAEDPAQAIDDIRAKAEAAFKA

Sequences:

>Translated_222_residues
MSNIAIAPSILSADFCNLERDLKAIANADLVHVDVMDHHFVPNLTLGEPIVGRICQVTDLPVDVHLMIEDPDRWAPEYAK
LGAASVSFHMGATHAPVRLARQLREMGCKACFAVRPAEPVEPIFDILDEFDMVLIMTVEPGFGGQKFLDNQMAKVRRLRD
EITRRGLKTRIQVDGGVSPKTAHIVAEAGADVLVAGSAVYGAEDPAQAIDDIRAKAEAAFKA
>Mature_221_residues
SNIAIAPSILSADFCNLERDLKAIANADLVHVDVMDHHFVPNLTLGEPIVGRICQVTDLPVDVHLMIEDPDRWAPEYAKL
GAASVSFHMGATHAPVRLARQLREMGCKACFAVRPAEPVEPIFDILDEFDMVLIMTVEPGFGGQKFLDNQMAKVRRLRDE
ITRRGLKTRIQVDGGVSPKTAHIVAEAGADVLVAGSAVYGAEDPAQAIDDIRAKAEAAFKA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=225, Percent_Identity=42.6666666666667, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI219879828, Length=216, Percent_Identity=41.2037037037037, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI24307923, Length=177, Percent_Identity=38.9830508474576, Blast_Score=124, Evalue=7e-29,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=42.9223744292237, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI1790523, Length=210, Percent_Identity=32.3809523809524, Blast_Score=123, Evalue=8e-30,
Organism=Escherichia coli, GI1790754, Length=201, Percent_Identity=29.3532338308458, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=222, Percent_Identity=42.3423423423423, Blast_Score=170, Evalue=5e-43,
Organism=Saccharomyces cerevisiae, GI6322341, Length=232, Percent_Identity=40.0862068965517, Blast_Score=179, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24586301, Length=219, Percent_Identity=40.1826484018265, Blast_Score=167, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24107; Mature: 23976

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIAIAPSILSADFCNLERDLKAIANADLVHVDVMDHHFVPNLTLGEPIVGRICQVTDL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
PVDVHLMIEDPDRWAPEYAKLGAASVSFHMGATHAPVRLARQLREMGCKACFAVRPAEPV
CEEEEEEEECCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCH
EPIFDILDEFDMVLIMTVEPGFGGQKFLDNQMAKVRRLRDEITRRGLKTRIQVDGGVSPK
HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TAHIVAEAGADVLVAGSAVYGAEDPAQAIDDIRAKAEAAFKA
HHEEEEECCCCEEEECCEECCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNIAIAPSILSADFCNLERDLKAIANADLVHVDVMDHHFVPNLTLGEPIVGRICQVTDL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
PVDVHLMIEDPDRWAPEYAKLGAASVSFHMGATHAPVRLARQLREMGCKACFAVRPAEPV
CEEEEEEEECCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCH
EPIFDILDEFDMVLIMTVEPGFGGQKFLDNQMAKVRRLRDEITRRGLKTRIQVDGGVSPK
HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TAHIVAEAGADVLVAGSAVYGAEDPAQAIDDIRAKAEAAFKA
HHEEEEECCCCEEEECCEECCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]