| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692149
Identifier: 213692149
GI number: 213692149
Start: 1470711
End: 1470995
Strand: Direct
Name: 213692149
Synonym: Blon_1269
Alternate gene names: NA
Gene position: 1470711-1470995 (Clockwise)
Preceding gene: 213692148
Following gene: 213692150
Centisome position: 51.92
GC content: 70.88
Gene sequence:
>285_bases ATGGCCGGATCCGACTGGATGCGGCGCGCCGCATGCACGCGCATGGAGCCCGACATCTTCTACCCGGTCGGAGACGGGGC GTACGCGCGTGAGATGACCGAGATCGCGAAACAGGCGTGCCTGTCCTGCCCGGTGCGGGCCGAATGCCTCCGCCAGGCGT TGGAGACGGGCGAACAGTACGGGATCTGGGGCGGCATGACCCCGGAGGAACGGCGTGACCTGGCGCGCCGGGACATGCGG CGCCGTCGTTTCGCCGCCGCCAGGATGCGGGGCGTCGCGCGTTGA
Upstream 100 bases:
>100_bases CCGACGCGATTTGCGTGACGCGCGACCGTACGGTCGGGCCCATACCCCATGTCGTGTTCCTGCAACCCCCATGCGCGCGC CGATGATCGGGATACCGCCC
Downstream 100 bases:
>100_bases CCGCGGCCGTCGCCGGCCTCGTCCCGCTCGTCGACGCCGTCCGCCACCCGGTCCCGTTGAAGATATCCATGCGGCCCATG CTGGGCGCATCATGTGACGC
Product: transcription factor WhiB
Products: NA
Alternate protein names: Regulatory Protein; Transcription Factor WhiB Family; WhiB Family Transcription Factor; WhiB Family Transcriptional Regulator; WhiB Family Transcription Regulator
Number of amino acids: Translated: 94; Mature: 93
Protein sequence:
>94_residues MAGSDWMRRAACTRMEPDIFYPVGDGAYAREMTEIAKQACLSCPVRAECLRQALETGEQYGIWGGMTPEERRDLARRDMR RRRFAAARMRGVAR
Sequences:
>Translated_94_residues MAGSDWMRRAACTRMEPDIFYPVGDGAYAREMTEIAKQACLSCPVRAECLRQALETGEQYGIWGGMTPEERRDLARRDMR RRRFAAARMRGVAR >Mature_93_residues AGSDWMRRAACTRMEPDIFYPVGDGAYAREMTEIAKQACLSCPVRAECLRQALETGEQYGIWGGMTPEERRDLARRDMRR RRFAAARMRGVAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10790; Mature: 10658
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 7.4 %Met (Translated Protein) 11.7 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 6.5 %Met (Mature Protein) 10.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGSDWMRRAACTRMEPDIFYPVGDGAYAREMTEIAKQACLSCPVRAECLRQALETGEQY CCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHC GIWGGMTPEERRDLARRDMRRRRFAAARMRGVAR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AGSDWMRRAACTRMEPDIFYPVGDGAYAREMTEIAKQACLSCPVRAECLRQALETGEQY CCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHC GIWGGMTPEERRDLARRDMRRRRFAAARMRGVAR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA