| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692095
Identifier: 213692095
GI number: 213692095
Start: 1396824
End: 1397375
Strand: Reverse
Name: 213692095
Synonym: Blon_1214
Alternate gene names: NA
Gene position: 1397375-1396824 (Counterclockwise)
Preceding gene: 213692098
Following gene: 213692086
Centisome position: 49.33
GC content: 73.91
Gene sequence:
>552_bases ATGGAAGACGGGAACGTGAGGGCGACGCTCGACATGCTCGCCGGACTGGGATTGGAAGTGCGCGTGATGCGCGAGACGCC GTTCCTCGCGGTCGTGGAGAACCCCGCCATCCCGTTGCGCAGGGTCGCCGTCGCCGCCCCGGACGGGGACGGGTCCGCCC GGGCCGCCATGTTCGAAACCGATCCGGACACCGGCCGCAACCGGCCGCACGGGGATTCCGCGGCCGTCCCCCGCGACGAT CCGTGGCCGGCGGTCGCCGGCATGTGCCGGACATGGCCGGCCGGCCTCGGCGCGCTCGGGGACGCCGCCGGGCTCACCCG GGCCGAACTCGCCCGCAGGACGGGGATCGCGGCCTCCAGGATCAGCGAATACGCCCGGCCGCGCCCTGGGCGCGCGGACC CCGGCAACATGACGCTGCGCACCGCCCGCGCCCTGGCCCGCGCGCTCGGCGTCACCATCGACGACCTGTACGACGCCATG GCCATTCGCATACCGGAAAACGGACCGACGGTCCGACAGGCGGGAACATCCGATCCGGTCCGCCGGGCATGA
Upstream 100 bases:
>100_bases ATGCATACACGCGAACCGGAATGCATACACGGTCCCGCGCATGCGGCTCCACGGCATCGCGAACCCCCGGGGAGCCCGGC GAAACGGATCGCAGGATCGC
Downstream 100 bases:
>100_bases AAAAGGGCCCGCACGGCACGTCGCCAAGCGGGCCCGGGATCCACCCCCGTCTAGGGGCGGACGAGCAGGAAACGGTACGG GAGAGGATCCGTCTCGCCGC
Product: transcriptional regulator, XRE family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MEDGNVRATLDMLAGLGLEVRVMRETPFLAVVENPAIPLRRVAVAAPDGDGSARAAMFETDPDTGRNRPHGDSAAVPRDD PWPAVAGMCRTWPAGLGALGDAAGLTRAELARRTGIAASRISEYARPRPGRADPGNMTLRTARALARALGVTIDDLYDAM AIRIPENGPTVRQAGTSDPVRRA
Sequences:
>Translated_183_residues MEDGNVRATLDMLAGLGLEVRVMRETPFLAVVENPAIPLRRVAVAAPDGDGSARAAMFETDPDTGRNRPHGDSAAVPRDD PWPAVAGMCRTWPAGLGALGDAAGLTRAELARRTGIAASRISEYARPRPGRADPGNMTLRTARALARALGVTIDDLYDAM AIRIPENGPTVRQAGTSDPVRRA >Mature_183_residues MEDGNVRATLDMLAGLGLEVRVMRETPFLAVVENPAIPLRRVAVAAPDGDGSARAAMFETDPDTGRNRPHGDSAAVPRDD PWPAVAGMCRTWPAGLGALGDAAGLTRAELARRTGIAASRISEYARPRPGRADPGNMTLRTARALARALGVTIDDLYDAM AIRIPENGPTVRQAGTSDPVRRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19333; Mature: 19333
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDGNVRATLDMLAGLGLEVRVMRETPFLAVVENPAIPLRRVAVAAPDGDGSARAAMFET CCCCCEEHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEC DPDTGRNRPHGDSAAVPRDDPWPAVAGMCRTWPAGLGALGDAAGLTRAELARRTGIAASR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHH ISEYARPRPGRADPGNMTLRTARALARALGVTIDDLYDAMAIRIPENGPTVRQAGTSDPV HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCEEEEEECCCCCCCCCCCCCCCC RRA CCC >Mature Secondary Structure MEDGNVRATLDMLAGLGLEVRVMRETPFLAVVENPAIPLRRVAVAAPDGDGSARAAMFET CCCCCEEHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEC DPDTGRNRPHGDSAAVPRDDPWPAVAGMCRTWPAGLGALGDAAGLTRAELARRTGIAASR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHH ISEYARPRPGRADPGNMTLRTARALARALGVTIDDLYDAMAIRIPENGPTVRQAGTSDPV HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCEEEEEECCCCCCCCCCCCCCCC RRA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA