Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is ybbA [C]

Identifier: 213691960

GI number: 213691960

Start: 1257741

End: 1258394

Strand: Direct

Name: ybbA [C]

Synonym: Blon_1078

Alternate gene names: 213691960

Gene position: 1257741-1258394 (Clockwise)

Preceding gene: 213691959

Following gene: 213691961

Centisome position: 44.4

GC content: 67.28

Gene sequence:

>654_bases
ATGAAGGCGTTTCCAGGCAAGGACGGGAGCGTGCTGGAGATATTGCATGATACATCGCTGGCCATCGATCGCGGCGAGCT
CGTGGCCATCGTCGGGCCGTCCGGCTCGGGCAAAAGCACGCTGTTGTCGTTACTGGGCACGCTGGACATGCCGACCTCGG
GAATAATGCGATACGACGGCGGGGATGTGAATGCGATGGGTGAGCGGCAGCGCAGCGTCCTGCGGGCCGCGCGCATCGGC
TTCGTGTTCCATCAGTTCCATCTGATCGCCACCGTAGCCGCCTTGGAGAACGCGATGACCGGCCTGCAATACACGACCAT
GCCGCGCGGCGAACGCCGGCAACGGGCCTCCGAGGCATTGGAACAGGTCGGATTGGGGAATCGCCTGCATCACCGGCCGG
CCCAGTTGTCGGGCGGCGAACAGCAGCGTGTGGCCATCGCCCGCGCCCTGGCCAAACGGCCGGACATCATCTTCGCCGAT
GAGCCGACCGGCCGATCGCCCTCGACTGGACCTCCCTGCCGCTCGCCTGGGCCGCCGCCATCCTGGTCGGCATCCTCGCC
GGCCTCTACCCGGCCTCCCGCGCCGCCCGTCTCACCGCGACCGAGGCCCTGCGCGGCGAATAGGGGCGACGGCTGGAGTG
AACGATCACCATGA

Upstream 100 bases:

>100_bases
TCGCCGAGGAACCGCCGTTGACCACCCTCAGTCAGTTTGCGCTGACAGCTCCCGCCAGCGGGAGCCAGAGCATGGGGCAT
TGCTGACGTTGGAGCATGTG

Downstream 100 bases:

>100_bases
GTGCGCAGCCTCAATGTCACTTTTATTGCACATGATGACATGTGCAATAAAAGTGACATATTGGTGCTGGGCGGAGAGAG
CACGCGTGGCGCGGGCGAGG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKAFPGKDGSVLEILHDTSLAIDRGELVAIVGPSGSGKSTLLSLLGTLDMPTSGIMRYDGGDVNAMGERQRSVLRAARIG
FVFHQFHLIATVAALENAMTGLQYTTMPRGERRQRASEALEQVGLGNRLHHRPAQLSGGEQQRVAIARALAKRPDIIFAD
EPTGRSPSTGPPCRSPGPPPSWSASSPASTRPPAPPVSPRPRPCAANRGDGWSERSP

Sequences:

>Translated_217_residues
MKAFPGKDGSVLEILHDTSLAIDRGELVAIVGPSGSGKSTLLSLLGTLDMPTSGIMRYDGGDVNAMGERQRSVLRAARIG
FVFHQFHLIATVAALENAMTGLQYTTMPRGERRQRASEALEQVGLGNRLHHRPAQLSGGEQQRVAIARALAKRPDIIFAD
EPTGRSPSTGPPCRSPGPPPSWSASSPASTRPPAPPVSPRPRPCAANRGDGWSERSP
>Mature_217_residues
MKAFPGKDGSVLEILHDTSLAIDRGELVAIVGPSGSGKSTLLSLLGTLDMPTSGIMRYDGGDVNAMGERQRSVLRAARIG
FVFHQFHLIATVAALENAMTGLQYTTMPRGERRQRASEALEQVGLGNRLHHRPAQLSGGEQQRVAIARALAKRPDIIFAD
EPTGRSPSTGPPCRSPGPPPSWSASSPASTRPPAPPVSPRPRPCAANRGDGWSERSP

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=157, Percent_Identity=37.5796178343949, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI171184400, Length=158, Percent_Identity=37.9746835443038, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI255708477, Length=157, Percent_Identity=35.031847133758, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI156105685, Length=166, Percent_Identity=34.3373493975904, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI9961250, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI4505771, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI9961252, Length=157, Percent_Identity=35.6687898089172, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI148612844, Length=163, Percent_Identity=38.0368098159509, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI9955963, Length=169, Percent_Identity=34.3195266272189, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=168, Percent_Identity=50.5952380952381, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787105, Length=163, Percent_Identity=46.6257668711656, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI87081834, Length=159, Percent_Identity=47.1698113207547, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787029, Length=152, Percent_Identity=48.0263157894737, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789032, Length=147, Percent_Identity=43.5374149659864, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788761, Length=158, Percent_Identity=42.4050632911392, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788225, Length=170, Percent_Identity=42.9411764705882, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1786398, Length=152, Percent_Identity=36.1842105263158, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1790544, Length=160, Percent_Identity=43.125, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789873, Length=140, Percent_Identity=40, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87081791, Length=148, Percent_Identity=37.8378378378378, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789672, Length=154, Percent_Identity=36.3636363636364, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87081709, Length=149, Percent_Identity=37.5838926174497, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787370, Length=160, Percent_Identity=36.25, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1787712, Length=148, Percent_Identity=37.8378378378378, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786872, Length=154, Percent_Identity=41.5584415584416, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=153, Percent_Identity=35.2941176470588, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789962, Length=173, Percent_Identity=35.2601156069364, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786563, Length=150, Percent_Identity=36.6666666666667, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788644, Length=163, Percent_Identity=37.4233128834356, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790467, Length=146, Percent_Identity=36.3013698630137, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789963, Length=165, Percent_Identity=33.9393939393939, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1786253, Length=144, Percent_Identity=36.1111111111111, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87082267, Length=161, Percent_Identity=32.9192546583851, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790534, Length=163, Percent_Identity=36.8098159509202, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788053, Length=155, Percent_Identity=32.9032258064516, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1788506, Length=167, Percent_Identity=37.125748502994, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787164, Length=151, Percent_Identity=39.7350993377483, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787759, Length=178, Percent_Identity=35.9550561797753, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788450, Length=155, Percent_Identity=34.8387096774194, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789891, Length=156, Percent_Identity=36.5384615384615, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790162, Length=161, Percent_Identity=31.6770186335404, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI48994997, Length=153, Percent_Identity=38.562091503268, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789586, Length=158, Percent_Identity=36.0759493670886, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786319, Length=165, Percent_Identity=31.5151515151515, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788165, Length=150, Percent_Identity=31.3333333333333, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790525, Length=156, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI87081782, Length=157, Percent_Identity=31.2101910828025, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790739, Length=156, Percent_Identity=30.1282051282051, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789593, Length=167, Percent_Identity=32.3353293413174, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48994883, Length=169, Percent_Identity=32.5443786982249, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789991, Length=172, Percent_Identity=31.9767441860465, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082268, Length=156, Percent_Identity=32.6923076923077, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787548, Length=162, Percent_Identity=30.8641975308642, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787500, Length=178, Percent_Identity=29.7752808988764, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI48995001, Length=166, Percent_Identity=26.5060240963855, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1789864, Length=166, Percent_Identity=25.9036144578313, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=166, Percent_Identity=31.9277108433735, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=160, Percent_Identity=35, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71992290, Length=154, Percent_Identity=34.4155844155844, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=156, Percent_Identity=33.974358974359, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=156, Percent_Identity=33.974358974359, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=156, Percent_Identity=33.974358974359, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=160, Percent_Identity=34.375, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17511077, Length=168, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=157, Percent_Identity=35.031847133758, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=165, Percent_Identity=34.5454545454545, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115533592, Length=155, Percent_Identity=37.4193548387097, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17533971, Length=158, Percent_Identity=31.0126582278481, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=155, Percent_Identity=36.1290322580645, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=161, Percent_Identity=31.6770186335404, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=166, Percent_Identity=35.5421686746988, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=152, Percent_Identity=35.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=165, Percent_Identity=32.1212121212121, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193208177, Length=158, Percent_Identity=34.8101265822785, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=166, Percent_Identity=30.1204819277108, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=156, Percent_Identity=35.2564102564103, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=158, Percent_Identity=36.7088607594937, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17552010, Length=168, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=158, Percent_Identity=34.1772151898734, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=159, Percent_Identity=33.9622641509434, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI28574744, Length=146, Percent_Identity=36.3013698630137, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17647219, Length=162, Percent_Identity=35.8024691358025, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI85726357, Length=157, Percent_Identity=36.9426751592357, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641565, Length=165, Percent_Identity=36.3636363636364, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45552805, Length=165, Percent_Identity=36.969696969697, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281363262, Length=157, Percent_Identity=34.3949044585987, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24653245, Length=157, Percent_Identity=34.3949044585987, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19920532, Length=174, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24580930, Length=174, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24659289, Length=175, Percent_Identity=30.2857142857143, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI85724864, Length=171, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580555, Length=171, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85816269, Length=171, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580553, Length=171, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17647959, Length=160, Percent_Identity=34.375, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397593, Length=158, Percent_Identity=36.7088607594937, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17136662, Length=168, Percent_Identity=29.7619047619048, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23057; Mature: 23057

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKAFPGKDGSVLEILHDTSLAIDRGELVAIVGPSGSGKSTLLSLLGTLDMPTSGIMRYDG
CCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
GDVNAMGERQRSVLRAARIGFVFHQFHLIATVAALENAMTGLQYTTMPRGERRQRASEAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHH
EQVGLGNRLHHRPAQLSGGEQQRVAIARALAKRPDIIFADEPTGRSPSTGPPCRSPGPPP
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
SWSASSPASTRPPAPPVSPRPRPCAANRGDGWSERSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKAFPGKDGSVLEILHDTSLAIDRGELVAIVGPSGSGKSTLLSLLGTLDMPTSGIMRYDG
CCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
GDVNAMGERQRSVLRAARIGFVFHQFHLIATVAALENAMTGLQYTTMPRGERRQRASEAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHH
EQVGLGNRLHHRPAQLSGGEQQRVAIARALAKRPDIIFADEPTGRSPSTGPPCRSPGPPP
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
SWSASSPASTRPPAPPVSPRPRPCAANRGDGWSERSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]