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The map label for this gene is xerD [H]

Identifier: 213691797

GI number: 213691797

Start: 1069051

End: 1069977

Strand: Direct

Name: xerD [H]

Synonym: Blon_0905

Alternate gene names: 213691797

Gene position: 1069051-1069977 (Clockwise)

Preceding gene: 213691796

Following gene: 213691798

Centisome position: 37.74

GC content: 61.92

Gene sequence:

>927_bases
ATGACCAACGGATTCACCAGACTCACCGAGCAGTTCCTCGTCCACATCGGTGTGGAGCGAGGACTCGCCACGGCCACCGT
CACCGCCTACGAATCCGACATCGCCAAATACATTGATTGGCTCGAAACCCGCGGCATCCACGAACCGGACGCCATAACCA
AACAAGACGTCGAAGACTACATCGCCGCCCTTGACCAGGCGGGGGAGTCCGCCCGCTCCAAAGCCCGAAGACTGGCCTCG
ATCCACGAATTCCATCGCTTCGCGCTCGGTCAGCACGCGGTGACTGCCGACGTTTCTGCCGCAGTCAAGGCACCCAAAGG
TGCCAGCACCCTGCCTGACGTACTCACCGTGGACGAGGTAACCCGTCTGCTCGACACGGCGGCAGTCGGCGGATCAACCG
ATCCGGTGGTATTGCGGGACAAGGCCCTGCTCGAATTCATGTACGCCACCGGCTGCCGCGTCTCGGAAGCCACCGGCACG
AATCTGGACGATATCGACCTGGACGAGCACATCGCGCGACTCATGGGCAAGGGCTCCAAGCAGCGGCTTGTGCCATTGGG
CAGCTACGCATGCCGGGCCATCACCGCATACCTCAATGCGGGGCGTGGCGAGCTGGAACGGCGCTCCAGCGCCAAGATTC
CCGAGAGACGCGCACTGTTTCTCAACAAACGTGGCAAGCGCATCTCGCGGCAATCGGTATGGGAAATCGTCAAAGCAACC
GGGGAACGGGCCGGCATCACCAAACCACTCCATCCGCACACCCTGCGTCATTCGTTCGCCACGCACCTGATTCAGGGTGG
CGCGGACGTGCGTACCGTGCAGGAACTGTTGGGGCATGCCAGCGTGACCACCACGCAGATCTACACGCATGTCAGTCCCG
AAGCGCTTATCGAAACCTATCTCACCGCCCATCCTCGGGCGCGATGA

Upstream 100 bases:

>100_bases
GACTTCACACTAGAAACCCCGCTTCCGAGCGGGGTTTCCTATTATCAGTCCCCTCTGACGAGGGGGCTCTCGCGCAGCGG
GTGGGGGAGAGAACAAACTC

Downstream 100 bases:

>100_bases
CCGATGTCTGGCGAGGTGATGAGACGGGTTGTCCGCGATATGTCGAAGCAACGTGTTTGCGGCGATATTGGCGAACGGAT
AAGAGTACGCTGGTCAGGTG

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTNGFTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLAS
IHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGT
NLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKAT
GERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR

Sequences:

>Translated_308_residues
MTNGFTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLAS
IHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGT
NLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKAT
GERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR
>Mature_307_residues
TNGFTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLASI
HEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGTN
LDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATG
ERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=308, Percent_Identity=39.2857142857143, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1790244, Length=300, Percent_Identity=36.3333333333333, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1790767, Length=180, Percent_Identity=31.6666666666667, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790768, Length=179, Percent_Identity=31.8435754189944, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33725; Mature: 33593

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNGFTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDY
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
IAALDQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
TRLLDTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSK
HHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHCCCCC
QRLVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKAT
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
GERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETY
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
LTAHPRAR
HHCCCCCC
>Mature Secondary Structure 
TNGFTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDY
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
IAALDQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
TRLLDTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSK
HHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHCCCCC
QRLVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKAT
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
GERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETY
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
LTAHPRAR
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]