| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ispH [H]
Identifier: 213691790
GI number: 213691790
Start: 1063634
End: 1064626
Strand: Direct
Name: ispH [H]
Synonym: Blon_0898
Alternate gene names: 213691790
Gene position: 1063634-1064626 (Clockwise)
Preceding gene: 213691787
Following gene: 213691794
Centisome position: 37.55
GC content: 59.32
Gene sequence:
>993_bases ATGACCAAAAGCGTTGTGCTCGCTGATCCGCGAGGCTTCTGCGCGGGTGTGGACCGTGCGATTCTTACCGTACAGACCAT TCTCAAAGCCGCGGAGGCTTCCGGAAAGCGGACGCGCGAGGATGGGCTGCCCCCGGTATATGTGCGCCGGCAGATCGTGC ACAACAAGCATGTGGTCGAGGACTTGGCCGGGCAAGGCGCGGTGTTCGTCCAGGAATTGGCGGAGATTCCGGATGCTGCT GCCCAAGCGGGTATTCCGGTGGTGTTTTCCGCCCATGGCGTATCTCCGGTAGTGAAGGCGGAAGCCGAACGTCGTGGCAT GCATGTGGTGGATGCCACCTGCCCTCTGGTGGGTAAGGTGCACCGTGAGGTGCTGCGTTTCGTGCGCAAGGGGTATGAAA TCGTCTATATCGGGCACAAGGGCCACGATGAAGCAGTCGGCGTGGTGGGGGAGAACCCCGAACATGTGCACTTGATCGAG CATGAATCGGATGTCGATTCGTTGGATTTTGCGCCCGACACCAAGTTGGTGCTGCTCTCGCAGACCACGTTGAGCGTGGA TGAGACCGCCGGCACCATTGCCGCGCTGAAGGCCAAGTTCCCGTGGATTCAAGAGCCGCCGAGTTCGGATATCTGCTATG CCACGTCGAATCGTCAGGCTGCGGTCAAACTGGTGGCCCAGCAGTCCGATTGCGTGGTGATTGTCGGATCGGCCAACTCC TCGAATTCCGTGCGACTGATGGAGGTGGCGCAGGAGGGCTTGGGGAAGCGCGGCAAAGCGTATCGCGTGGATGATGCCAG CGAGCTTGATCCGGCGTGGTTCGTCGGACTGGAGTCCGTGGGTATCTCCTCAGGTGCCTCCGTGCCGGACGAACTGGTGT CCGGTGTGATTGACGCTCTGCAAAACTTGGGTTTCACCGGTATGAAGTCCATCGAAACCATCAAAGAAAACATGCACTTC GTGTTGCCGGCGGAGTTGCGTAGGAAGAAATAG
Upstream 100 bases:
>100_bases GAAACCGGTGATTCGTGGGAGACACGGAATAGTTGTGACGGCAGATTCCTGTAATCCCTGCCTTACACTGGAAAACACTA TTGACGTTCAGGAGGTTCCG
Downstream 100 bases:
>100_bases TCATCCTTGGCTCCCCTCACCGAGGGAAGCCAAGAACGGTCACCACGTGCCGATTGGTGCGGCAATGGCGTTCATCACCT TCAGCAGGTCCTGCGGGTTC
Product: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MTKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVEDLAGQGAVFVQELAEIPDAA AQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKVHREVLRFVRKGYEIVYIGHKGHDEAVGVVGENPEHVHLIE HESDVDSLDFAPDTKLVLLSQTTLSVDETAGTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANS SNSVRLMEVAQEGLGKRGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDALQNLGFTGMKSIETIKENMHF VLPAELRRKK
Sequences:
>Translated_330_residues MTKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVEDLAGQGAVFVQELAEIPDAA AQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKVHREVLRFVRKGYEIVYIGHKGHDEAVGVVGENPEHVHLIE HESDVDSLDFAPDTKLVLLSQTTLSVDETAGTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANS SNSVRLMEVAQEGLGKRGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDALQNLGFTGMKSIETIKENMHF VLPAELRRKK >Mature_329_residues TKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVEDLAGQGAVFVQELAEIPDAAA QAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKVHREVLRFVRKGYEIVYIGHKGHDEAVGVVGENPEHVHLIEH ESDVDSLDFAPDTKLVLLSQTTLSVDETAGTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANSS NSVRLMEVAQEGLGKRGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDALQNLGFTGMKSIETIKENMHFV LPAELRRKK
Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]
COG id: COG0761
COG function: function code IM; Penicillin tolerance protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispH family [H]
Homologues:
Organism=Escherichia coli, GI1786212, Length=326, Percent_Identity=46.6257668711656, Blast_Score=278, Evalue=5e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003451 [H]
Pfam domain/function: PF02401 LYTB [H]
EC number: =1.17.1.2 [H]
Molecular weight: Translated: 35439; Mature: 35308
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVE CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHH DLAGQGAVFVQELAEIPDAAAQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKV HHCCCCHHHHHHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHH HREVLRFVRKGYEIVYIGHKGHDEAVGVVGENPEHVHLIEHESDVDSLDFAPDTKLVLLS HHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEE QTTLSVDETAGTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANS CCEECCHHHCCHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCC SNSVRLMEVAQEGLGKRGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDAL CCCEEHHHHHHHCCCCCCCEEECCCCCCCCCHHEEEHHHCCCCCCCCCHHHHHHHHHHHH QNLGFTGMKSIETIKENMHFVLPAELRRKK HHCCCCCHHHHHHHHHCCEEEECHHHHCCC >Mature Secondary Structure TKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVE CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHH DLAGQGAVFVQELAEIPDAAAQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKV HHCCCCHHHHHHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHH HREVLRFVRKGYEIVYIGHKGHDEAVGVVGENPEHVHLIEHESDVDSLDFAPDTKLVLLS HHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEE QTTLSVDETAGTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANS CCEECCHHHCCHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCC SNSVRLMEVAQEGLGKRGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDAL CCCEEHHHHHHHCCCCCCCEEECCCCCCCCCHHEEEHHHCCCCCCCCCHHHHHHHHHHHH QNLGFTGMKSIETIKENMHFVLPAELRRKK HHCCCCCHHHHHHHHHCCEEEECHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12381787 [H]