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The map label for this gene is rpoE [H]

Identifier: 213691786

GI number: 213691786

Start: 1059980

End: 1060732

Strand: Direct

Name: rpoE [H]

Synonym: Blon_0894

Alternate gene names: 213691786

Gene position: 1059980-1060732 (Clockwise)

Preceding gene: 213691783

Following gene: 213691787

Centisome position: 37.42

GC content: 59.76

Gene sequence:

>753_bases
ATGGCAGCCAAGCGCGCCAGATTCGAGCAGCTCGCCATGCCCGCCGTCAATGCACTGTACCGGCAGGCGATGAGGCTGAC
CAACAATCCCGATGACGCGCAGGATCTGGTCCAGGACACCTTCGAACGCGGGTTCAAGGCCTTCGACTCATTCCAGCCGG
GCTCCAACTTCGAGGCGTGGATGACCACCATCGAGCGCAATGCCTACTTCAACCAGTATGCCAAGGCCAAGCGGCGCCCG
CAGCGTGCCAACGACTCCACTGGCGAATACGACGATTGGGACATCTACGATGCCGCCGAACATACGTCGGAGGGGCTCAA
GTCCGCTGAAGAGGAATATTTGGACGCCTTCGCGCCCGAGGAAATCATGGCCGCGCTCGCCAAACTCTCGCCGGAACGCC
GGCAGGTGTTCATCGACGCCGCCATCGACGGCAAGTCCTACCAGCAGGTGGCCGATGAGCAGGGCGTGAAAATCGGCACG
GTAATGAGCCGCCTGAATCGCGCCCGCACGCAACTCAAGCGTGAGCTCGCCTCGTATGCGAAAGAGCGCGGGTACGTGAC
TGGTTCGTCGGCTGGTTCACCATCCGCGAAGTTGAGCGAAAACGTTGGTCGAATCGCCGATTCCGGCCATAATGAAAGTA
GTGGACAAACTGTTGGCAGCAATGGCGACACGCAAGCCGTAGTGAGACATAGTCATGCGACTCACGCCCACACGCCACAA
CAGTCAAGCAAGCTTTCGGGAAAGGAGATCTGA

Upstream 100 bases:

>100_bases
TCGACCACGATATGGGCACATGATTTGATTAGAATGGTGAACCGTGACGACAAGCGAAGCAACTACGCAATCCGGGCAGT
CGGCCGGATCGGGCGAGTCC

Downstream 100 bases:

>100_bases
TGAACGATCAGCCGGTAGAGCGTACTCGCCATATCTCCATAACCCGTACGGCGGCCGATGGCACGGTAAGCCAGACCGAA
GTGCATATCACGGCGGTGCA

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAWMTTIERNAYFNQYAKAKRRP
QRANDSTGEYDDWDIYDAAEHTSEGLKSAEEEYLDAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGT
VMSRLNRARTQLKRELASYAKERGYVTGSSAGSPSAKLSENVGRIADSGHNESSGQTVGSNGDTQAVVRHSHATHAHTPQ
QSSKLSGKEI

Sequences:

>Translated_250_residues
MAAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAWMTTIERNAYFNQYAKAKRRP
QRANDSTGEYDDWDIYDAAEHTSEGLKSAEEEYLDAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGT
VMSRLNRARTQLKRELASYAKERGYVTGSSAGSPSAKLSENVGRIADSGHNESSGQTVGSNGDTQAVVRHSHATHAHTPQ
QSSKLSGKEI
>Mature_249_residues
AAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAWMTTIERNAYFNQYAKAKRRPQ
RANDSTGEYDDWDIYDAAEHTSEGLKSAEEEYLDAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTV
MSRLNRARTQLKRELASYAKERGYVTGSSAGSPSAKLSENVGRIADSGHNESSGQTVGSNGDTQAVVRHSHATHAHTPQQ
SSKLSGKEI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 27675; Mature: 27543

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAW
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
MTTIERNAYFNQYAKAKRRPQRANDSTGEYDDWDIYDAAEHTSEGLKSAEEEYLDAFAPE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
EIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKRELASYA
HHHHHHHHCCHHHHEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KERGYVTGSSAGSPSAKLSENVGRIADSGHNESSGQTVGSNGDTQAVVRHSHATHAHTPQ
HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
QSSKLSGKEI
HHHCCCCCCC
>Mature Secondary Structure 
AAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAW
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
MTTIERNAYFNQYAKAKRRPQRANDSTGEYDDWDIYDAAEHTSEGLKSAEEEYLDAFAPE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
EIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKRELASYA
HHHHHHHHCCHHHHEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KERGYVTGSSAGSPSAKLSENVGRIADSGHNESSGQTVGSNGDTQAVVRHSHATHAHTPQ
HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
QSSKLSGKEI
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]