| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is dtd [H]
Identifier: 213691759
GI number: 213691759
Start: 1018627
End: 1019115
Strand: Direct
Name: dtd [H]
Synonym: Blon_0867
Alternate gene names: 213691759
Gene position: 1018627-1019115 (Clockwise)
Preceding gene: 213691755
Following gene: 213691760
Centisome position: 35.96
GC content: 58.9
Gene sequence:
>489_bases ATGAAAGTCGTATTGCAACGAGTATCCGAAGCGTCCGTGGACGTGGTCAATGAATTGGGCACGCTGGATCCCACGTTCGA GCCGCAGCAGATTGGCCCGGGATTCATGATTCTGGTGGGCGTCACCGATGAGGACGGCGACAAGCAGATCGCCTGGCTGG CCCATAAGATCCTGAATCTCAGGGTGTTCGAGGATGCGCAGGGCAAGATGAACCGTTCGATTCAGGACATCGGCGGCGAG ATTCTCTCCATCTCGCAGTTCACGCTGTTTGCCGACGTGCACAAGGGCAATCGCCCGAGCTTCATCAAGGCCGGCAAGCC CGAGCATGCCGATCTCATGTGGATCAAGTTCAACGAGGCGTTGCGCTCCGGGGGAGTACCGGTGAAGGAAGGTCGTTTCG GCGCGCATATGCGGGTCGGGCTGGTCAATGACGGGCCGGTGACCATCGTCATCGACACCGAGCATGACATGCCTGACGGA ACACGCTGA
Upstream 100 bases:
>100_bases TCAACCTTGGCAGAGCGTCCACGGTGCCTCGACCTGCTGGTTGCCGCAGTATTGGCATGGTTCGGTGGTGGTGACTGCAC ACGTTGTACTGTAGGGAACC
Downstream 100 bases:
>100_bases ATTGCGATAATGATTTGACATCATATCCCGTTCCCTCCAACATGTTACTAAAGCGCTTTAGTCTCCTGCGGGCGAGGGCG CATGTCGATATGTTTCCCAT
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNLRVFEDAQGKMNRSIQDIGGE ILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEALRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDG TR
Sequences:
>Translated_162_residues MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNLRVFEDAQGKMNRSIQDIGGE ILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEALRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDG TR >Mature_162_residues MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNLRVFEDAQGKMNRSIQDIGGE ILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEALRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDG TR
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=156, Percent_Identity=44.2307692307692, Blast_Score=112, Evalue=2e-25, Organism=Escherichia coli, GI1790320, Length=149, Percent_Identity=41.6107382550336, Blast_Score=124, Evalue=4e-30, Organism=Caenorhabditis elegans, GI115533292, Length=158, Percent_Identity=39.2405063291139, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6319982, Length=158, Percent_Identity=41.7721518987342, Blast_Score=114, Evalue=6e-27, Organism=Drosophila melanogaster, GI281361569, Length=155, Percent_Identity=39.3548387096774, Blast_Score=114, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 17819; Mature: 17819
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNL CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHE RVFEDAQGKMNRSIQDIGGEILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEA EEECCCCCHHCCCHHHCCCCEEEEEEEEEEEEECCCCCCCEEECCCCCCCEEEEEEECHH LRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDGTR HHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNL CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHE RVFEDAQGKMNRSIQDIGGEILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEA EEECCCCCHHCCCHHHCCCCEEEEEEEEEEEEECCCCCCCEEECCCCCCCEEEEEEECHH LRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDGTR HHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA