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The map label for this gene is helD [H]

Identifier: 213691740

GI number: 213691740

Start: 996722

End: 999052

Strand: Reverse

Name: helD [H]

Synonym: Blon_0846

Alternate gene names: 213691740

Gene position: 999052-996722 (Counterclockwise)

Preceding gene: 213691756

Following gene: 213691739

Centisome position: 35.27

GC content: 62.68

Gene sequence:

>2331_bases
TTGAATGCCTTAAGTTTTTCTGCCCCACGGAAATGGAACGAAGAGAACAGCATGTCGAGTTACGCCTCCCAGCTGCATGA
GGAGCAGCAGGCCGTCGATCGCGCCTATGGACGATTGGACGATCTGCGAGCCGAAATGTGGCAACGCCTGGACACCGTAC
GCGCCGCCGGCTCCCACGGATCCCCCACGCAACGCAGCGAACGAGACTCCTTTGCCACAATGTACGAAAACCGCCTCACG
CAATTGCGCAGCGTTGAGGATCGGCTGGTGTTTGGCCGCCTCGATGCCAAGAACGGCGACCGTCATTACATCGGCCGCAT
CGGCCTGTCGAGCCCGGACCATGAGCCGATTCTGACCGACTGGCGTGCCGAAGCCGCACGTCCTTTCTATGAGGCGACCC
CCTCCAATCACGGCGACATCGTGATGCGCAGGCATATCACCTTGAGTTTCCGCGAAGTCGTGGGCGTTGAGGATGAGGTG
CTCGACGTGCATTCAGACCAGGTCGGCCAGGCGTCTTCCGCCGGCACATTGACCGGCGAGGGTGCGCTGCTGGCTTCGTT
GAGCTCACGCCGCACCGGCAAGATGACCGATATCGTGGCCACCATTCAGGCCGAGCAGGACCGCATCATCCGCTCCGACA
TGAATCGCGCCGTGGTGGTGCAGGGCGGCCCCGGCACCGGCAAGACGGCAGTGGCGCTCCATCGCGCCGCCTACCTGCTG
TACACGCACCGGCGCACGCTGGAACGTTCCGGCGTGCTGGTGGTTGGCCCTAGCTCGGCGTTCCTGCACTACATTGATCA
GGTGCTGCCCTCCTTGGGCGAGACCGGCGTGGTCTCACGCACCATCAGCGATCTGATTCCCGGCATCACCGCCACGGCGG
TCGACTCCCCTTATGCAGCCAAGCTCAAAGGCGACCGACGCATGACCTCCGTAGTGGCCAATGCCATCGCCGCACGCGTG
CGTGTTCCCGCTGCTCTGCCGACAGTAACCATTAGCGGCATTCAGGTACCGATGCTGGCCACTGATATCGAACAGGCGCA
GGCGGACGCGAAGCGCACCCGGCAACCTCATAACAAGGCCCGCGAGACCTTTATCCGTTCGATGCTGACCAGCATGCAGA
ACCGTTATGCCGAACAGCTTGATTACACGCCGGATCAGGCGGAGCTGAACCGCGCGATGTCGCTGCTGCGTATGAACGAG
CAGGTGCGCAAGACCCTGAACCTGTGCTGGCTGCCGATGACCGCCCCATGGCTCATCGATCAGCTGTTCGCCCATCCCGA
ACGTCTGAAGTCTCTGGCTGGTTGGCTGACCGACAACGACATCGCGGCACTTGCCCGCCCCAAGGGCTCCCCGCTGACCC
GTTCCGATATTCCGCTGCTCGACGAAGCGATGGATATGCTGGGCCCCGATCCCAAGACGGTGGCCCGCCAGTCCGCCGCC
GACGCACGTCGTGCCGCCGAAGAGCAGTATGCCAAAGACACGCTGGCCGCGACCGGTCTGGGTGGAGGCATCGTCTCCAG
TCAGATGCTGCTCGACCAGATGAACGGGGACGACGCTGAGCTGACCGCGCAGCGGGCCGCGGCCGACCGTGAATGGACCT
ACGGGCACATCGTGGTCGATGAAGCGCAGGAACTGACCGCCATGGACTGGCGTATGTTGATCCGCCGTTGCCCCTCCCGC
TCGTTCACCATCGTGGGCGATGTGGCGCAGACTTCGGCGCTGGGTGGCACCCGACGCTGGAGCAAATCGATGAACCGCCT
GTTCGGAGAAAGCCACTGGGATCTGAACGAGTTGACCATCAACTACCGCAATCCGCAGGAAGTTTCCGAACTTGCCTCAC
GATTCGCCGAGAAGGAAGGCCTCTATATCTCCACGGTCAATGCGGTGCGCACCATCCCCGATTCGGTGTCCCGCAACGTG
GTGCCCGACATGTCGTCCTTGCTGGAAACGACGGCCGAGCAGGCGGCGCAGCTTGCCGAACAATTCGTTTCGGCAGACGG
CACCGGCCGCATCGCCGTCATCTGTCCGGATGATCTCATCGCCCCGGTGCGCGACGCCGTGCGCCGCAAACTGGCCGCCA
TTCTTGACCCGGCCGAATACGCAAGGCTCATCGAGCAGCCCGAATGGGATGAGCAAATCAGCGTCTGCGGCACCGAAACG
GTCAAGGGTCTGGAGTTCGATGCCGTCGTGGTGGTCGAGCCCGGTCTCATCGGGGATGACGCGCCGAGCCGCCCGGTCGC
CGCTTCGGACCTGTACGTGGCAATGACCAGGCCGACCCAGAAACTGGTTATAGTTCGGACAAAAACAGACGAGAAGTCCC
TGAACATCTAA

Upstream 100 bases:

>100_bases
CACGTTGTGCACTCCACCGACCAAGCAGCATGGTGAATTCACGCTGAATTCACCTATTCCGGGTTGTCCGCATCACTGAC
GTAGGGGGTGTGCGGTAAAT

Downstream 100 bases:

>100_bases
GGTATGAAGCATGCCCAAAGCACTGTTATTGGAAAACATTCACCCCGACGCGGCCAAGTCGTTGCGTGACCACGGTTTCG
AAGTCGAGACCATGAAGGGC

Product: narrowly conserved hypothetical protein with helicase motifs

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 776

Protein sequence:

>776_residues
MNALSFSAPRKWNEENSMSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLDTVRAAGSHGSPTQRSERDSFATMYENRLT
QLRSVEDRLVFGRLDAKNGDRHYIGRIGLSSPDHEPILTDWRAEAARPFYEATPSNHGDIVMRRHITLSFREVVGVEDEV
LDVHSDQVGQASSAGTLTGEGALLASLSSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL
YTHRRTLERSGVLVVGPSSAFLHYIDQVLPSLGETGVVSRTISDLIPGITATAVDSPYAAKLKGDRRMTSVVANAIAARV
RVPAALPTVTISGIQVPMLATDIEQAQADAKRTRQPHNKARETFIRSMLTSMQNRYAEQLDYTPDQAELNRAMSLLRMNE
QVRKTLNLCWLPMTAPWLIDQLFAHPERLKSLAGWLTDNDIAALARPKGSPLTRSDIPLLDEAMDMLGPDPKTVARQSAA
DARRAAEEQYAKDTLAATGLGGGIVSSQMLLDQMNGDDAELTAQRAAADREWTYGHIVVDEAQELTAMDWRMLIRRCPSR
SFTIVGDVAQTSALGGTRRWSKSMNRLFGESHWDLNELTINYRNPQEVSELASRFAEKEGLYISTVNAVRTIPDSVSRNV
VPDMSSLLETTAEQAAQLAEQFVSADGTGRIAVICPDDLIAPVRDAVRRKLAAILDPAEYARLIEQPEWDEQISVCGTET
VKGLEFDAVVVVEPGLIGDDAPSRPVAASDLYVAMTRPTQKLVIVRTKTDEKSLNI

Sequences:

>Translated_776_residues
MNALSFSAPRKWNEENSMSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLDTVRAAGSHGSPTQRSERDSFATMYENRLT
QLRSVEDRLVFGRLDAKNGDRHYIGRIGLSSPDHEPILTDWRAEAARPFYEATPSNHGDIVMRRHITLSFREVVGVEDEV
LDVHSDQVGQASSAGTLTGEGALLASLSSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL
YTHRRTLERSGVLVVGPSSAFLHYIDQVLPSLGETGVVSRTISDLIPGITATAVDSPYAAKLKGDRRMTSVVANAIAARV
RVPAALPTVTISGIQVPMLATDIEQAQADAKRTRQPHNKARETFIRSMLTSMQNRYAEQLDYTPDQAELNRAMSLLRMNE
QVRKTLNLCWLPMTAPWLIDQLFAHPERLKSLAGWLTDNDIAALARPKGSPLTRSDIPLLDEAMDMLGPDPKTVARQSAA
DARRAAEEQYAKDTLAATGLGGGIVSSQMLLDQMNGDDAELTAQRAAADREWTYGHIVVDEAQELTAMDWRMLIRRCPSR
SFTIVGDVAQTSALGGTRRWSKSMNRLFGESHWDLNELTINYRNPQEVSELASRFAEKEGLYISTVNAVRTIPDSVSRNV
VPDMSSLLETTAEQAAQLAEQFVSADGTGRIAVICPDDLIAPVRDAVRRKLAAILDPAEYARLIEQPEWDEQISVCGTET
VKGLEFDAVVVVEPGLIGDDAPSRPVAASDLYVAMTRPTQKLVIVRTKTDEKSLNI
>Mature_776_residues
MNALSFSAPRKWNEENSMSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLDTVRAAGSHGSPTQRSERDSFATMYENRLT
QLRSVEDRLVFGRLDAKNGDRHYIGRIGLSSPDHEPILTDWRAEAARPFYEATPSNHGDIVMRRHITLSFREVVGVEDEV
LDVHSDQVGQASSAGTLTGEGALLASLSSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL
YTHRRTLERSGVLVVGPSSAFLHYIDQVLPSLGETGVVSRTISDLIPGITATAVDSPYAAKLKGDRRMTSVVANAIAARV
RVPAALPTVTISGIQVPMLATDIEQAQADAKRTRQPHNKARETFIRSMLTSMQNRYAEQLDYTPDQAELNRAMSLLRMNE
QVRKTLNLCWLPMTAPWLIDQLFAHPERLKSLAGWLTDNDIAALARPKGSPLTRSDIPLLDEAMDMLGPDPKTVARQSAA
DARRAAEEQYAKDTLAATGLGGGIVSSQMLLDQMNGDDAELTAQRAAADREWTYGHIVVDEAQELTAMDWRMLIRRCPSR
SFTIVGDVAQTSALGGTRRWSKSMNRLFGESHWDLNELTINYRNPQEVSELASRFAEKEGLYISTVNAVRTIPDSVSRNV
VPDMSSLLETTAEQAAQLAEQFVSADGTGRIAVICPDDLIAPVRDAVRRKLAAILDPAEYARLIEQPEWDEQISVCGTET
VKGLEFDAVVVVEPGLIGDDAPSRPVAASDLYVAMTRPTQKLVIVRTKTDEKSLNI

Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]

COG id: COG3973

COG function: function code R; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 85496; Mature: 85496

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALSFSAPRKWNEENSMSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLDTVRAAGSHG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPTQRSERDSFATMYENRLTQLRSVEDRLVFGRLDAKNGDRHYIGRIGLSSPDHEPILTD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCCCCCCCCHHC
WRAEAARPFYEATPSNHGDIVMRRHITLSFREVVGVEDEVLDVHSDQVGQASSAGTLTGE
HHHHHCCCHHHCCCCCCCCEEEEEEEEEEHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC
GALLASLSSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
YTHRRTLERSGVLVVGPSSAFLHYIDQVLPSLGETGVVSRTISDLIPGITATAVDSPYAA
HHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCHH
KLKGDRRMTSVVANAIAARVRVPAALPTVTISGIQVPMLATDIEQAQADAKRTRQPHNKA
HCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECHHHHHHHHHHHHHHHHCCCHHHH
RETFIRSMLTSMQNRYAEQLDYTPDQAELNRAMSLLRMNEQVRKTLNLCWLPMTAPWLID
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHH
QLFAHPERLKSLAGWLTDNDIAALARPKGSPLTRSDIPLLDEAMDMLGPDPKTVARQSAA
HHHHCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
DARRAAEEQYAKDTLAATGLGGGIVSSQMLLDQMNGDDAELTAQRAAADREWTYGHIVVD
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEC
EAQELTAMDWRMLIRRCPSRSFTIVGDVAQTSALGGTRRWSKSMNRLFGESHWDLNELTI
CHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHEEE
NYRNPQEVSELASRFAEKEGLYISTVNAVRTIPDSVSRNVVPDMSSLLETTAEQAAQLAE
ECCCHHHHHHHHHHHHHHCCCEEEEHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
QFVSADGTGRIAVICPDDLIAPVRDAVRRKLAAILDPAEYARLIEQPEWDEQISVCGTET
HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCHHH
VKGLEFDAVVVVEPGLIGDDAPSRPVAASDLYVAMTRPTQKLVIVRTKTDEKSLNI
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNALSFSAPRKWNEENSMSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLDTVRAAGSHG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPTQRSERDSFATMYENRLTQLRSVEDRLVFGRLDAKNGDRHYIGRIGLSSPDHEPILTD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCCCCCCCCHHC
WRAEAARPFYEATPSNHGDIVMRRHITLSFREVVGVEDEVLDVHSDQVGQASSAGTLTGE
HHHHHCCCHHHCCCCCCCCEEEEEEEEEEHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC
GALLASLSSRRTGKMTDIVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLL
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
YTHRRTLERSGVLVVGPSSAFLHYIDQVLPSLGETGVVSRTISDLIPGITATAVDSPYAA
HHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCHH
KLKGDRRMTSVVANAIAARVRVPAALPTVTISGIQVPMLATDIEQAQADAKRTRQPHNKA
HCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECHHHHHHHHHHHHHHHHCCCHHHH
RETFIRSMLTSMQNRYAEQLDYTPDQAELNRAMSLLRMNEQVRKTLNLCWLPMTAPWLID
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHH
QLFAHPERLKSLAGWLTDNDIAALARPKGSPLTRSDIPLLDEAMDMLGPDPKTVARQSAA
HHHHCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
DARRAAEEQYAKDTLAATGLGGGIVSSQMLLDQMNGDDAELTAQRAAADREWTYGHIVVD
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEC
EAQELTAMDWRMLIRRCPSRSFTIVGDVAQTSALGGTRRWSKSMNRLFGESHWDLNELTI
CHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHEEE
NYRNPQEVSELASRFAEKEGLYISTVNAVRTIPDSVSRNVVPDMSSLLETTAEQAAQLAE
ECCCHHHHHHHHHHHHHHCCCEEEEHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
QFVSADGTGRIAVICPDDLIAPVRDAVRRKLAAILDPAEYARLIEQPEWDEQISVCGTET
HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCHHH
VKGLEFDAVVVVEPGLIGDDAPSRPVAASDLYVAMTRPTQKLVIVRTKTDEKSLNI
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]