| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is dnaE [H]
Identifier: 213691703
GI number: 213691703
Start: 936943
End: 939579
Strand: Direct
Name: dnaE [H]
Synonym: Blon_0808
Alternate gene names: 213691703
Gene position: 936943-939579 (Clockwise)
Preceding gene: 213691701
Following gene: 213691704
Centisome position: 33.08
GC content: 47.36
Gene sequence:
>2637_bases ATGCAGCCGATTCGAATTCGAAGCAACCATGACTATGGAGGCGGTGCTCTTATGCGGGATTTCGTTAATTTGCATGTACA TAGTGACTATTCGCTGGCAGATGGTGTCTCTACTGTGAGCGAGCTGATGAGTGAAGCGCAACGATTAGGTCAGCCAGCAA TTGGTCTGACTGATCACGGCAGTGTCGGCGGTTTGATGGAGTTCTGGAAAGCAGGACGTCAGCGAGGCATTAAGCCGATT TTGGGTGTTGAAGCATACGTAACGCCAGAAACTGGCCGCACGGATACGAGATGCGTATCTTGGGATAATTCGTGGAAAGA GAGGAATACTCGAAGAAGTGTTACTTGTGTGCCTCATGATCCTTATGATGTCAGCGGTGGTGGGCTGTTTACTCACTTGA CGCTATGGGCAGAGTCCGATGAAGGTCTTGTCAATCTCATGAAAGCATCTTCCGTGGCGAATCTCGAAGGTCTGGTCTCG CGTTATCCTCGCATGGATAACAATGTCTTGTCATCATTTGCAAAAGGACTTATTTGTGGGTCGGGCTGCATGTCTGGAGC CATTCCGACAAGATTGTTGCTTGGACAATTTGATGAAGCGTTGCGAATGGCCGGTGAACTACAGGATATTTTCGGTCGAG ATAATTTCTTTATAGAAATCATGGATCATGGTTTGTCCATTGAGCACCAAATCAGGAATGATCTAGTGGAACTGGCGAAA CGAATTAATGCGCCGTTAGTCGCAACTAGTGATGTGCATTATGCAAAGCGTGATGACAGTCTAAAACATGATGTGCGTAT ATGCATTGAAACAGGTGATGTGATGGATGGTCCTCATCGTTTCAAGTTTGAAAGCGAGGAGTATTATTTGCGTTCATCTG CGGTTATGCGGTCTCTGTTCTCCGATGTGCCTGAAGCCTGCGACAATACGTTGCTCATAGCAGAGCGGTGCGATACCGGA TTTTGTGTAGCGGAAGATGGCTCATTAATGCCGCAGCATGTTGGTGCTGATGGCCGAGCGTCGAGTGAAATTCTTCAAGG GGAAGTTGAAGGATGGCTGCAAACGAAGTATGGAAGCATACCGGATTCAGTGTGGAATCGTGCTCAACACGAAATGGCTG TGATTCGTGAAACCCATGCTGAAGAATACTTGATGGCCGTCGCATATTGTACGAATCGATTGCGAGAAGAGGGGCATTTG GTCGGGCCCGGGAAGGGGATATTGGCTCGCAGCCTTGTCGCCTATGCGCTGGGGATTAGTGAGATTGATCCCATCGAATA CGATTTACCCTTTACTGATTTTCAAGATTCAGTCTTTCCTACAGCTGTTTTGCAAACGGAACGGGGACTGTCCAGGCGGG TATTGCAATATCTATGTGACCGATATGGGAATGGTTATGCAGCTGCTGTAATTGCATACAGCCGTTTTAACGATGCCAAG GCAGTGAAAGATGTGTCGCATGTATGCGGATATCAACGGTTCTGGGATGCATCCTCGGCTGAGGTTTGGTTGCAGGATAA CGCCAAGAAGTCTATTGCGGATGGGTTGAAAGACTGTATATATGACTGTTCCGTTCGCAGTGATGTGTTGGCTCTTTGCA ACAAGCCCCTTGCCGAAGTAACGTCCATTGTTCGTTTTCCTTCGGGGGCAGAAAGCACCGCGTTTGATGCAAAAGGCTGT GATGAACTTGGGCTTCCTCGTCTCCGTATTGCAGGTTCGAGAGTTTTGCAGGTGGTGCAGGATGCCCTTCGATTCATACC GGATTGCAATGTGCCGCAAGTATGGGACGATTCTTGCAGTTCGTTGGATGAGAGCCGTGTGTATGACTTACTGTCCGCGG GCTATACGGCCGGTATTCCATTCTTGGATGGAATGAAGAGCGAACTGATGCAGCAGAAGCTTACCTCTTTTGCGGAGCTA ATTGACATATGCCATAGCAGAGGTGCCGACCGCGCAGATGCTGTTGCTCGTGCAATGTTCGCATACCGTGTCGCCTATGT GAAAACGTTATACACAATCGAATTCATGACCGCAATGTTGAATAGTTATAACGAGGATGGCGCTAGAGCGAAACTGGAAA GTATATTTGAAGAAATGTACTGTTTAGGTATTCATGTAAGAATGCCAAACATTAATCAATCTCAATATTATGCGACAGCG TATTCCAGTACCGGTGACGATGAGAAATCGGCATATGGAATTCAGCTCGGTTTTAATGCGATACGGGGCATTTCGGAACA ATTGGCAGAAGAAATCGTTTCAACCCGTAATAAGGGCAGTGCCTATCGCAGTTTTAATGATTTTATACGTCGTGTTTCAT TGGAACATTGCAATGCAGGGAATGTCAATTACCTCATTAGAGCCGGTGCTTTTGATTGCGTCAACCCCTGCAGGAAGGCT CTTGCCCAATGTGGCAATGACCTTATCGAGGCGGAAAGGCAATACAGAGCAGCACAATCCCATGGACAGGGTGATTTATT GCAGGATGTAATGGATGCAAGTCCTTGTGCGCAAAAGAGTACAGATGAAGTCGTCCCTAATGGTTCGGATTGGGATCAAA CCACTCGGCAACAGCTCCAGTGTGAGTCTTTCAAATGGCCAATAGGACGTGCGATTGAACAATATGTGTGTGCTTAG
Upstream 100 bases:
>100_bases TGCGATGAGACGGCCATCATGTTCCTCTCGCTGAGTATCGAGACTGCTTCAAGAACCAGTAGATAATTACCGTTGATTGT AGCGCGGCAGGAAACTGAAC
Downstream 100 bases:
>100_bases ACGGCAATGTGATACTACGAAATCACTAGGCTTGCGTAAGAGTGCAAAGTGTCATGCGCGAAGTCCCGGATATTTGTTGC GTCAGTTATATGCTGAGAAC
Product: DNA polymerase III, alpha subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MQPIRIRSNHDYGGGALMRDFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHGSVGGLMEFWKAGRQRGIKPI LGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHDPYDVSGGGLFTHLTLWAESDEGLVNLMKASSVANLEGLVS RYPRMDNNVLSSFAKGLICGSGCMSGAIPTRLLLGQFDEALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAK RINAPLVATSDVHYAKRDDSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTG FCVAEDGSLMPQHVGADGRASSEILQGEVEGWLQTKYGSIPDSVWNRAQHEMAVIRETHAEEYLMAVAYCTNRLREEGHL VGPGKGILARSLVAYALGISEIDPIEYDLPFTDFQDSVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAK AVKDVSHVCGYQRFWDASSAEVWLQDNAKKSIADGLKDCIYDCSVRSDVLALCNKPLAEVTSIVRFPSGAESTAFDAKGC DELGLPRLRIAGSRVLQVVQDALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLDGMKSELMQQKLTSFAEL IDICHSRGADRADAVARAMFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYATA YSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCNAGNVNYLIRAGAFDCVNPCRKA LAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQKSTDEVVPNGSDWDQTTRQQLQCESFKWPIGRAIEQYVCA
Sequences:
>Translated_878_residues MQPIRIRSNHDYGGGALMRDFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHGSVGGLMEFWKAGRQRGIKPI LGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHDPYDVSGGGLFTHLTLWAESDEGLVNLMKASSVANLEGLVS RYPRMDNNVLSSFAKGLICGSGCMSGAIPTRLLLGQFDEALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAK RINAPLVATSDVHYAKRDDSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTG FCVAEDGSLMPQHVGADGRASSEILQGEVEGWLQTKYGSIPDSVWNRAQHEMAVIRETHAEEYLMAVAYCTNRLREEGHL VGPGKGILARSLVAYALGISEIDPIEYDLPFTDFQDSVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAK AVKDVSHVCGYQRFWDASSAEVWLQDNAKKSIADGLKDCIYDCSVRSDVLALCNKPLAEVTSIVRFPSGAESTAFDAKGC DELGLPRLRIAGSRVLQVVQDALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLDGMKSELMQQKLTSFAEL IDICHSRGADRADAVARAMFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYATA YSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCNAGNVNYLIRAGAFDCVNPCRKA LAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQKSTDEVVPNGSDWDQTTRQQLQCESFKWPIGRAIEQYVCA >Mature_878_residues MQPIRIRSNHDYGGGALMRDFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHGSVGGLMEFWKAGRQRGIKPI LGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHDPYDVSGGGLFTHLTLWAESDEGLVNLMKASSVANLEGLVS RYPRMDNNVLSSFAKGLICGSGCMSGAIPTRLLLGQFDEALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAK RINAPLVATSDVHYAKRDDSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTG FCVAEDGSLMPQHVGADGRASSEILQGEVEGWLQTKYGSIPDSVWNRAQHEMAVIRETHAEEYLMAVAYCTNRLREEGHL VGPGKGILARSLVAYALGISEIDPIEYDLPFTDFQDSVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAK AVKDVSHVCGYQRFWDASSAEVWLQDNAKKSIADGLKDCIYDCSVRSDVLALCNKPLAEVTSIVRFPSGAESTAFDAKGC DELGLPRLRIAGSRVLQVVQDALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLDGMKSELMQQKLTSFAEL IDICHSRGADRADAVARAMFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYATA YSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCNAGNVNYLIRAGAFDCVNPCRKA LAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQKSTDEVVPNGSDWDQTTRQQLQCESFKWPIGRAIEQYVCA
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase [H]
COG id: COG0587
COG function: function code L; DNA polymerase III, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-C family. DnaE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786381, Length=673, Percent_Identity=27.0430906389302, Blast_Score=197, Evalue=3e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR004365 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR004805 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha; PF02811 PHP; PF01336 tRNA_anti [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 97395; Mature: 97395
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPIRIRSNHDYGGGALMRDFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHG CCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC SVGGLMEFWKAGRQRGIKPILGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHD CCCHHHHHHHHHHHCCCCCEECCEEEECCCCCCCCCEEECCCCCHHHCCCCCCEEECCCC PYDVSGGGLFTHLTLWAESDEGLVNLMKASSVANLEGLVSRYPRMDNNVLSSFAKGLICG CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEC SGCMSGAIPTRLLLGQFDEALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAK CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH RINAPLVATSDVHYAKRDDSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLF HCCCCEEEECCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH SDVPEACDNTLLIAERCDTGFCVAEDGSLMPQHVGADGRASSEILQGEVEGWLQTKYGSI HHHHHHHCCCEEEEECCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC PDSVWNRAQHEMAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGIS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHCCC EIDPIEYDLPFTDFQDSVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAK CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHEEHHHCCHHH AVKDVSHVCGYQRFWDASSAEVWLQDNAKKSIADGLKDCIYDCSVRSDVLALCNKPLAEV HHHHHHHHHCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHH TSIVRFPSGAESTAFDAKGCDELGLPRLRIAGSRVLQVVQDALRFIPDCNVPQVWDDSCS HHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH SLDESRVYDLLSAGYTAGIPFLDGMKSELMQQKLTSFAELIDICHSRGADRADAVARAMF CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYATA HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEE YSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCNAG ECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC NVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQKS CCEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC TDEVVPNGSDWDQTTRQQLQCESFKWPIGRAIEQYVCA CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MQPIRIRSNHDYGGGALMRDFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHG CCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC SVGGLMEFWKAGRQRGIKPILGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHD CCCHHHHHHHHHHHCCCCCEECCEEEECCCCCCCCCEEECCCCCHHHCCCCCCEEECCCC PYDVSGGGLFTHLTLWAESDEGLVNLMKASSVANLEGLVSRYPRMDNNVLSSFAKGLICG CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEC SGCMSGAIPTRLLLGQFDEALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAK CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH RINAPLVATSDVHYAKRDDSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLF HCCCCEEEECCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH SDVPEACDNTLLIAERCDTGFCVAEDGSLMPQHVGADGRASSEILQGEVEGWLQTKYGSI HHHHHHHCCCEEEEECCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC PDSVWNRAQHEMAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGIS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHCCC EIDPIEYDLPFTDFQDSVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAK CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHEEHHHCCHHH AVKDVSHVCGYQRFWDASSAEVWLQDNAKKSIADGLKDCIYDCSVRSDVLALCNKPLAEV HHHHHHHHHCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHH TSIVRFPSGAESTAFDAKGCDELGLPRLRIAGSRVLQVVQDALRFIPDCNVPQVWDDSCS HHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH SLDESRVYDLLSAGYTAGIPFLDGMKSELMQQKLTSFAELIDICHSRGADRADAVARAMF CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYATA HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEE YSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCNAG ECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC NVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQKS CCEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC TDEVVPNGSDWDQTTRQQLQCESFKWPIGRAIEQYVCA CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]